SRR3550174_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550174_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1094248
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	7346	0.6713286202030984	No Hit
CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	5659	0.5171588159174154	No Hit
CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT	4245	0.3879376521592911	No Hit
TCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	2771	0.25323327070280227	No Hit
ACTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	1934	0.17674238381061697	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1450	0.132511094377143	No Hit
GCCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	1391	0.1271192636404179	No Hit
ACCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	1167	0.10664858423319029	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAG	25	3.890682E-5	45.000004	1
TCTAGCG	75	0.0	45.000004	1
ACTAGCG	25	3.890682E-5	45.000004	1
TACGACG	45	3.8562575E-10	45.000004	1
CCATACG	25	3.890682E-5	45.000004	37
GTCGTTA	25	3.890682E-5	45.000004	19
GATGCGA	25	3.890682E-5	45.000004	11
TATAGCG	50	2.1827873E-11	45.000004	1
TAAGACG	25	3.890682E-5	45.000004	1
ATACCCG	25	3.890682E-5	45.000004	15
CGAACCG	20	7.0331397E-4	45.0	30
CATGCGT	35	1.2118653E-7	45.0	12
GCGCCTA	35	1.2118653E-7	45.0	9
TAAGTCG	20	7.0331397E-4	45.0	25
ATGTCGC	20	7.0331397E-4	45.0	35
CCCAACG	20	7.0331397E-4	45.0	6
GTCACGA	20	7.0331397E-4	45.0	34
ACTACGG	35	1.2118653E-7	45.0	2
GTATCCG	20	7.0331397E-4	45.0	8
ACGTCCG	20	7.0331397E-4	45.0	22