SRR3550167_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550167_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1859694
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	6552	0.352316026184953	TruSeq Adapter, Index 23 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	5840	0.3140301576495918	TruSeq Adapter, Index 23 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT	4072	0.218960753758414	TruSeq Adapter, Index 20 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2206	0.11862166571489718	No Hit
TCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	2175	0.11695472480956544	TruSeq Adapter, Index 23 (95% over 22bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2006	0.10786720826114404	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAACG	30	2.166229E-6	45.000004	14
TAAACCG	30	2.166229E-6	45.000004	36
GGATCGA	30	2.166229E-6	45.000004	8
TTCGTCG	30	2.166229E-6	45.000004	1
TCGAAAC	30	2.166229E-6	45.000004	13
GTCGATA	20	7.034414E-4	45.0	39
CGTATCA	40	6.8193913E-9	45.0	25
CCGCTTA	20	7.034414E-4	45.0	13
CCGTATC	25	3.891739E-5	45.0	4
TCGTCAA	20	7.034414E-4	45.0	14
GTCGTAC	20	7.034414E-4	45.0	22
CAATACG	25	3.891739E-5	45.0	30
TACGTCG	25	3.891739E-5	45.0	13
TCTATCG	20	7.034414E-4	45.0	43
CGAATAT	295	0.0	42.711864	14
TACGAAT	315	0.0	41.428574	12
CGTACAT	60	3.6379788E-12	41.250004	35
CTAACGG	115	0.0	41.086956	2
ATTGCGT	55	6.184564E-11	40.909092	12
TTAACGG	50	1.0822987E-9	40.5	2