SRR3550166_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550166_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1359084
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	7068	0.5200561554694191	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	4936	0.36318579278396335	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	3762	0.2768040827498521	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2741	0.20167995502853392	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1885	0.1386963572523847	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1609	0.11838856170773844	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	1386	0.1019804515394192	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATACG	25	3.891182E-5	45.000004	1
TACGACA	25	3.891182E-5	45.000004	1
AGTTACG	35	1.2121382E-7	45.000004	1
GTAAGCG	25	3.891182E-5	45.000004	1
CGTAACG	20	7.033742E-4	45.0	2
TTACGCG	20	7.033742E-4	45.0	1
CGATCTA	20	7.033742E-4	45.0	10
TCGACGT	20	7.033742E-4	45.0	26
GTGCGAT	20	7.033742E-4	45.0	11
ATACCGA	20	7.033742E-4	45.0	15
ATTTCGC	20	7.033742E-4	45.0	45
CTAAGCG	30	2.165796E-6	44.999996	1
TAGCCGT	30	2.165796E-6	44.999996	44
TACACGA	30	2.165796E-6	44.999996	37
CGATATA	75	0.0	42.0	10
CGTACAT	70	0.0	41.785717	35
CGTTAGG	195	0.0	40.384617	2
TCACGAC	45	1.9286745E-8	40.0	25
TAGGGTA	410	0.0	39.512196	5
TACACGC	565	0.0	39.424778	35