SRR3550160_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550160_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4544659
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	18473	0.4064771416293279	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT	15734	0.34620859342802174	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	13949	0.3069317191894926	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	6454	0.14201285508989783	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCC	6164	0.13563173826683148	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	5135	0.11298977547050285	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5058	0.11129547893472316	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG	4593	0.10106368816670294	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCAACA	30	2.1669239E-6	45.000004	24
CGATCGA	20	7.0354895E-4	45.0	10
AACCGTA	40	3.4612276E-7	39.375	27
CGACTAT	40	3.4612276E-7	39.375	11
AACGGGA	1470	0.0	39.336735	4
TTACGCG	110	0.0	38.863636	1
CTAACGG	265	0.0	38.207546	2
CACAACG	1400	0.0	37.92857	12
TATCTCG	125	0.0	37.800003	1
ACAACGA	1400	0.0	37.607143	13
CGCGAAA	30	1.1404525E-4	37.500004	34
TAGTTCG	30	1.1404525E-4	37.500004	24
ATACCGG	180	0.0	37.500004	2
CGTTCGG	365	0.0	36.36986	45
GTATACG	130	0.0	36.346153	1
CCATCGA	755	0.0	36.059605	31
TACGATA	75	1.8189894E-12	36.000004	31
AATAGCG	150	0.0	36.000004	1
CGCATAT	50	4.8843503E-8	36.0	29
CATACGT	25	0.0021077627	36.0	26