SRR3550159_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550159_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2700739
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	23538	0.8715392342614373	No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT	18397	0.6811839278064263	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	18054	0.6684837002020558	No Hit
TCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	8783	0.3252072858576856	No Hit
ACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	6942	0.2570407581036154	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	4749	0.1758407606214447	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	3720	0.1377400778083332	No Hit
AGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	3546	0.13129739674955634	No Hit
GGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	3536	0.13092712772318985	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCC	3394	0.12566930754878572	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	3065	0.11348745658132829	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	2702	0.10004669092422482	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTCTAA	30	2.1665946E-6	45.000004	23
ACGTAAC	30	2.1665946E-6	45.000004	15
CGGTCGA	30	2.1665946E-6	45.000004	32
TATCGAT	60	0.0	45.000004	11
TACGTGA	30	2.1665946E-6	45.000004	19
GTCGACG	40	6.8212103E-9	45.0	1
CACGGAT	20	7.0349814E-4	45.0	20
CTATACG	40	6.8212103E-9	45.0	26
TCCTACG	25	3.89221E-5	45.0	45
ATCCGTT	45	3.8562575E-10	45.0	43
CTAACCG	25	3.89221E-5	45.0	13
ATTCACG	25	3.89221E-5	45.0	1
CTACGTT	25	3.89221E-5	45.0	30
ATATACG	20	7.0349814E-4	45.0	19
TCGCTAA	40	6.8212103E-9	45.0	19
TATTACG	20	7.0349814E-4	45.0	1
CAAATCG	20	7.0349814E-4	45.0	37
CGTACAT	25	3.89221E-5	45.0	34
CCGCGTA	25	3.89221E-5	45.0	17
GAACCGT	40	6.8212103E-9	45.0	20