SRR3550158_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550158_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2254107
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	16143	0.7161594369743761	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGCT	14485	0.6426048097982927	Illumina Single End Adapter 2 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	12165	0.5396815679113725	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	6236	0.27665057603742854	Illumina Single End Adapter 2 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	4579	0.20314031232767565	Illumina Single End Adapter 2 (95% over 21bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	3736	0.16574191021100596	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCC	3394	0.15056960472595135	No Hit
GCCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTG	3152	0.13983364587395364	No Hit
ACCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTG	2890	0.12821041769534455	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2831	0.12559297318184098	No Hit
CGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTG	2519	0.11175157168670342	No Hit
AGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTG	2507	0.1112192100907366	No Hit
GGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTG	2427	0.10767013278429108	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATTA	30	2.1664346E-6	45.000004	41
CGCGATA	30	2.1664346E-6	45.000004	13
TAAGCGA	30	2.1664346E-6	45.000004	14
CCACGCG	30	2.1664346E-6	45.000004	38
TCGCCTA	20	7.0347334E-4	45.0	43
AATCCGT	35	1.2126293E-7	45.0	44
CACGGCA	35	1.2126293E-7	45.0	43
CCCTATA	20	7.0347334E-4	45.0	21
GAATCGT	25	3.8920036E-5	45.0	12
CGACCCA	40	6.8193913E-9	45.0	13
GCGCCTA	35	1.2126293E-7	45.0	21
ATTCGGT	20	7.0347334E-4	45.0	12
AACGGTC	20	7.0347334E-4	45.0	9
CCCGTTG	20	7.0347334E-4	45.0	36
AATGCGT	25	3.8920036E-5	45.0	26
TCAATCG	50	2.1827873E-11	45.0	1
CTACGTA	25	3.8920036E-5	45.0	35
CGTAGAT	25	3.8920036E-5	45.0	8
CGTAGAC	25	3.8920036E-5	45.0	11
CGTACTA	25	3.8920036E-5	45.0	16