SRR3550157_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550157_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3611458
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	12431	0.34421001157981074	TruSeq Adapter, Index 21 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGCT	10564	0.29251343917055106	TruSeq Adapter, Index 14 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	10487	0.2903813362913261	TruSeq Adapter, Index 21 (95% over 21bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	5304	0.14686589183648266	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4783	0.13243958534198652	No Hit
TCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	4672	0.12936603443816874	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTA	30	2.1667984E-6	45.000004	29
CGCGATC	20	7.0352975E-4	45.0	28
TACGCTA	35	1.2129021E-7	45.0	5
ATATCGT	20	7.0352975E-4	45.0	11
CGTAGCA	25	3.892472E-5	45.0	16
ACGTATC	45	3.8562575E-10	45.0	29
ACCCGAT	45	3.8562575E-10	45.0	29
TACGTAA	25	3.892472E-5	45.0	16
AGTCGAC	20	7.0352975E-4	45.0	13
TACGTCG	65	0.0	44.999996	1
ATATCGC	60	3.6379788E-12	41.250004	42
TACGGGT	400	0.0	41.0625	4
TACGGGC	470	0.0	40.69149	4
TACGCAC	50	1.0822987E-9	40.5	1
CGTAAGG	615	0.0	39.878048	2
TTACGCG	40	3.460973E-7	39.375	1
ACCGTTA	40	3.460973E-7	39.375	37
TTACGGG	830	0.0	38.76506	3
CGAACAT	30	1.14040624E-4	37.500004	13
AACGCAT	30	1.14040624E-4	37.500004	29