SRR3550152_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550152_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	428240
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	2036	0.47543433588641887	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	1740	0.40631421632729314	No Hit
CTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGCT	1231	0.2874556323556884	TruSeq Adapter, Index 21 (95% over 23bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	981	0.2290771529983187	No Hit
TCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	758	0.17700354941154492	No Hit
ACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	575	0.13427050252195033	TruSeq Adapter, Index 21 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG	432	0.10087801232953485	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTGT	20	7.028322E-4	45.000004	16
GTCGCAA	20	7.028322E-4	45.000004	13
ATCTATG	20	7.028322E-4	45.000004	26
AATGCGG	35	1.209537E-7	45.000004	2
AGTGCGC	20	7.028322E-4	45.000004	13
CTAACGG	20	7.028322E-4	45.000004	2
GTAGACG	20	7.028322E-4	45.000004	1
TACGAAT	20	7.028322E-4	45.000004	12
ACGTGCC	20	7.028322E-4	45.000004	40
TTGCGTA	20	7.028322E-4	45.000004	14
AGCGATA	20	7.028322E-4	45.000004	34
TCCCGAC	20	7.028322E-4	45.000004	38
CGTAAGA	20	7.028322E-4	45.000004	40
CAACTCC	20	7.028322E-4	45.000004	26
GCCGTAA	20	7.028322E-4	45.000004	38
TGCACGT	20	7.028322E-4	45.000004	21
TTTCGGC	25	3.8866925E-5	45.0	16
CTCGCGC	25	3.8866925E-5	45.0	33
ACATGCG	25	3.8866925E-5	45.0	1
TATAGCG	25	3.8866925E-5	45.0	1