Basic Statistics
Measure | Value |
---|---|
Filename | SRR3550152_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 428240 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC | 2036 | 0.47543433588641887 | No Hit |
CCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC | 1740 | 0.40631421632729314 | No Hit |
CTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGCT | 1231 | 0.2874556323556884 | TruSeq Adapter, Index 21 (95% over 23bp) |
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC | 981 | 0.2290771529983187 | No Hit |
TCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC | 758 | 0.17700354941154492 | No Hit |
ACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC | 575 | 0.13427050252195033 | TruSeq Adapter, Index 21 (95% over 22bp) |
CGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG | 432 | 0.10087801232953485 | TruSeq Adapter, Index 21 (95% over 21bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AACGTGT | 20 | 7.028322E-4 | 45.000004 | 16 |
GTCGCAA | 20 | 7.028322E-4 | 45.000004 | 13 |
ATCTATG | 20 | 7.028322E-4 | 45.000004 | 26 |
AATGCGG | 35 | 1.209537E-7 | 45.000004 | 2 |
AGTGCGC | 20 | 7.028322E-4 | 45.000004 | 13 |
CTAACGG | 20 | 7.028322E-4 | 45.000004 | 2 |
GTAGACG | 20 | 7.028322E-4 | 45.000004 | 1 |
TACGAAT | 20 | 7.028322E-4 | 45.000004 | 12 |
ACGTGCC | 20 | 7.028322E-4 | 45.000004 | 40 |
TTGCGTA | 20 | 7.028322E-4 | 45.000004 | 14 |
AGCGATA | 20 | 7.028322E-4 | 45.000004 | 34 |
TCCCGAC | 20 | 7.028322E-4 | 45.000004 | 38 |
CGTAAGA | 20 | 7.028322E-4 | 45.000004 | 40 |
CAACTCC | 20 | 7.028322E-4 | 45.000004 | 26 |
GCCGTAA | 20 | 7.028322E-4 | 45.000004 | 38 |
TGCACGT | 20 | 7.028322E-4 | 45.000004 | 21 |
TTTCGGC | 25 | 3.8866925E-5 | 45.0 | 16 |
CTCGCGC | 25 | 3.8866925E-5 | 45.0 | 33 |
ACATGCG | 25 | 3.8866925E-5 | 45.0 | 1 |
TATAGCG | 25 | 3.8866925E-5 | 45.0 | 1 |