SRR3550148_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550148_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2520899
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

$Duplication level graph$

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGCT	18267	0.7246224461987569	No Hit
TCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	15312	0.6074023592377165	No Hit
CCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	14134	0.5606729980058701	No Hit
GCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	10537	0.41798580585735484	No Hit
TCCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTG	6159	0.2443176025695595	No Hit
TTCCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCT	4484	0.17787305243089868	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCC	3626	0.1438375754046473	No Hit
TGCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTG	3289	0.13046932860063018	No Hit
GCCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTG	2857	0.11333258492307705	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTC	2857	0.11333258492307705	No Hit
TGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGCTT	2826	0.11210286489066004	Illumina Single End Adapter 2 (95% over 21bp)
TTCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTG	2679	0.10627161183371486	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCAA	45	3.8562575E-10	45.000004	13
CGAACGA	55	1.8189894E-12	45.000004	22
GGTCGAA	25	3.8921346E-5	45.000004	25
CGACGGT	50	2.1827873E-11	45.000004	28
TCCGATA	55	1.8189894E-12	45.000004	14
CCGATAA	55	1.8189894E-12	45.000004	15
CGCGATA	25	3.8921346E-5	45.000004	40
CGCGACT	25	3.8921346E-5	45.000004	24
AACGCCG	25	3.8921346E-5	45.000004	36
ACTACGG	30	2.1665364E-6	45.000004	2
CCCGCGA	25	3.8921346E-5	45.000004	38
TCCGCGT	20	7.034891E-4	45.0	26
CGACGAA	20	7.034891E-4	45.0	38
CCGGCAC	20	7.034891E-4	45.0	30
CTACGCC	20	7.034891E-4	45.0	44
ACTACGT	20	7.034891E-4	45.0	35
ACGTCGT	20	7.034891E-4	45.0	1
CCGCGTT	20	7.034891E-4	45.0	25
TTCGATC	20	7.034891E-4	45.0	1
GCCCGAC	80	0.0	45.0	9