SRR3550147_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550147_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1064322
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	3266	0.30686202108008664	No Hit
CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT	3011	0.2829031063907351	No Hit
TCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	2431	0.2284083200384846	No Hit
GCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	2348	0.22060992819842115	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1906	0.1790811427368785	No Hit
TTTCTTGGGACTCAGTCTCTGTCTGTCTATCTCTGTGGCGTTCAGCCCCAC	1088	0.10222470267456654	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	30	2.1653486E-6	45.000004	15
ATCACGA	35	1.2118107E-7	45.000004	44
CGTAAGT	30	2.1653486E-6	45.000004	20
CCAGTCG	30	2.1653486E-6	45.000004	28
TCGAATC	30	2.1653486E-6	45.000004	45
TGCCGAT	30	2.1653486E-6	45.000004	20
GTCGCGA	20	7.0330524E-4	45.0	17
GTCGACT	20	7.0330524E-4	45.0	42
GCGCCTA	20	7.0330524E-4	45.0	15
CGCTATA	20	7.0330524E-4	45.0	36
TCGCTAA	20	7.0330524E-4	45.0	20
AACGCCA	20	7.0330524E-4	45.0	34
ACTACGG	20	7.0330524E-4	45.0	2
TCCGTGA	20	7.0330524E-4	45.0	26
ATAGTCG	20	7.0330524E-4	45.0	38
CGGTATC	20	7.0330524E-4	45.0	28
CGGTATA	40	6.8139343E-9	45.0	34
CGATCAA	20	7.0330524E-4	45.0	21
ACGACCG	20	7.0330524E-4	45.0	32
AGTCGTT	40	6.8139343E-9	45.0	26