##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550147_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1064322 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.480375299956215 34.0 31.0 34.0 31.0 34.0 2 32.6248531929247 34.0 31.0 34.0 31.0 34.0 3 32.68389171698039 34.0 31.0 34.0 31.0 34.0 4 36.07157608317784 37.0 35.0 37.0 35.0 37.0 5 31.71157412888205 37.0 35.0 37.0 0.0 37.0 6 33.482696026202596 37.0 35.0 37.0 17.0 37.0 7 35.25614334759594 37.0 35.0 37.0 32.0 37.0 8 35.79846700528599 37.0 35.0 37.0 35.0 37.0 9 37.85448858522139 39.0 38.0 39.0 35.0 39.0 10 37.67487001114324 39.0 37.0 39.0 35.0 39.0 11 37.59373291165643 39.0 37.0 39.0 35.0 39.0 12 37.35007544709214 39.0 37.0 39.0 35.0 39.0 13 37.28725517277666 39.0 37.0 39.0 34.0 39.0 14 38.551361336137 40.0 38.0 41.0 35.0 41.0 15 38.652083673925745 40.0 38.0 41.0 35.0 41.0 16 38.69927803803736 40.0 38.0 41.0 35.0 41.0 17 38.68413882264954 40.0 38.0 41.0 35.0 41.0 18 38.67105349696802 40.0 38.0 41.0 35.0 41.0 19 38.68573326493298 40.0 38.0 41.0 35.0 41.0 20 38.60527453157973 40.0 38.0 41.0 35.0 41.0 21 38.55809332138206 40.0 38.0 41.0 35.0 41.0 22 38.50766873183116 40.0 38.0 41.0 34.0 41.0 23 38.48034147560607 40.0 38.0 41.0 34.0 41.0 24 38.46349600966625 40.0 37.0 41.0 34.0 41.0 25 38.370857691563266 40.0 37.0 41.0 34.0 41.0 26 38.315753127343044 40.0 37.0 41.0 34.0 41.0 27 38.25004368978561 40.0 37.0 41.0 34.0 41.0 28 38.22061274689427 40.0 37.0 41.0 34.0 41.0 29 38.15702766643929 40.0 37.0 41.0 34.0 41.0 30 38.112004637694234 40.0 37.0 41.0 34.0 41.0 31 37.924647803954066 40.0 36.0 41.0 34.0 41.0 32 37.94376983657202 40.0 36.0 41.0 34.0 41.0 33 37.9392768353938 40.0 36.0 41.0 34.0 41.0 34 37.87147310682293 40.0 36.0 41.0 34.0 41.0 35 37.76283681066444 40.0 36.0 41.0 33.0 41.0 36 37.73113024066025 40.0 36.0 41.0 33.0 41.0 37 37.69056826787382 40.0 36.0 41.0 33.0 41.0 38 37.648281253229754 40.0 35.0 41.0 33.0 41.0 39 37.638955128241264 40.0 35.0 41.0 33.0 41.0 40 37.53238305700718 40.0 35.0 41.0 33.0 41.0 41 37.4874182813096 40.0 35.0 41.0 33.0 41.0 42 37.446205189782795 39.0 35.0 41.0 33.0 41.0 43 37.39513605844848 39.0 35.0 41.0 33.0 41.0 44 37.31940709672449 39.0 35.0 41.0 33.0 41.0 45 37.30576742752663 39.0 35.0 41.0 33.0 41.0 46 37.23968122429115 39.0 35.0 41.0 33.0 41.0 47 37.19443645813955 39.0 35.0 41.0 33.0 41.0 48 37.13766698423973 39.0 35.0 41.0 33.0 41.0 49 37.06533736970579 39.0 35.0 41.0 33.0 41.0 50 36.96989820749736 39.0 35.0 41.0 33.0 41.0 51 36.32966621003794 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 4.0 10 14.0 11 9.0 12 17.0 13 17.0 14 23.0 15 29.0 16 42.0 17 67.0 18 124.0 19 204.0 20 363.0 21 638.0 22 950.0 23 1482.0 24 2094.0 25 3184.0 26 4359.0 27 5576.0 28 7095.0 29 8848.0 30 11559.0 31 15842.0 32 21727.0 33 33893.0 34 59311.0 35 92543.0 36 83775.0 37 135609.0 38 214618.0 39 359834.0 40 469.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.265776710431616 4.826640809830108 53.91460479065546 16.992977689082814 2 19.5337501244924 5.010419778976663 53.148201390180795 22.307628706350147 3 21.509280086289674 5.104658176754779 51.15444386191397 22.231617875041575 4 18.975366477438218 5.312302104062493 50.67310456797849 25.0392268505208 5 16.805158589223936 17.283773143841806 43.176031313831714 22.73503695310254 6 21.146419974406243 6.981439827420649 53.093142864659384 18.77899733351373 7 84.31874940102713 2.6858413149404035 8.178727866190872 4.816681417841593 8 85.91582246726085 3.6814986442072986 5.963045018330919 4.439633870200935 9 81.12526096425707 5.559501729739684 7.955862981315804 5.359374324687454 10 39.79481773373096 29.473035415973737 15.63906411781397 15.093082732481337 11 31.322663629991677 26.241776454869857 22.669549252951647 19.76601066218682 12 28.454828519940396 22.68589768885732 28.26419072423571 20.595083066966577 13 25.33293495765379 24.261266797078328 29.366394756474072 21.039403488793802 14 21.088918579151798 27.493841149576916 28.294444726314026 23.12279554495726 15 19.76817166233527 24.966786367283586 34.01940390220253 21.245638068178614 16 21.76878801716022 23.5538680963092 32.16404433996479 22.513299546565797 17 21.805055237042925 23.829536550029033 28.226983939071072 26.13842427385697 18 21.913011287937298 24.342351280909348 29.4648611980209 24.279776233132456 19 24.42663028669895 25.101238159128535 27.587703721242256 22.88442783293026 20 27.256319046303656 25.431119529616037 27.39800549081951 19.9145559332608 21 27.219300174195403 24.692245391902073 27.064459815732455 21.023994618170065 22 24.25600523149949 23.98146425611798 27.09029786098568 24.672232651396854 23 23.798155069612392 25.766450378738764 26.54130986675085 23.894084684897994 24 23.98127634306159 24.774269441015033 28.278378159992933 22.966076055930444 25 23.449106567373406 25.83362929639714 26.906612848367317 23.810651287862132 26 21.41767247130098 27.9634358774882 26.480801862594216 24.138089788616604 27 22.387303842258262 27.295780788144942 27.678747597061793 22.638167772535002 28 21.908595331112203 26.88829132536958 28.681451665943204 22.52166167757502 29 21.36665407649189 25.588966496981175 28.931939770107167 24.112439656419767 30 22.696326863486803 27.64445346427115 26.566302303250332 23.092917368991714 31 24.58400747142312 28.105592104645023 24.290769146931098 23.01963127700076 32 24.14419696294918 28.153791803608307 25.33368660987934 22.368324623563172 33 25.04298511164854 27.76189912451307 24.523029684625516 22.672086079212868 34 23.359565996004967 25.817562730076048 27.02546785653214 23.797403417386846 35 22.409571539440133 25.088647984350597 27.481532844383562 25.02024763182571 36 24.235898534466074 28.418655256585883 25.632468369534784 21.712977839413263 37 24.10163465567751 28.8326277198066 25.573369713301048 21.49236791121484 38 22.87005248411665 27.883760741580087 24.739693438639808 24.506493335663453 39 23.546727400166493 26.443782990485964 26.37387933350997 23.635610275837575 40 23.635234449724802 26.59467717476478 27.71877307807224 22.051315297438183 41 21.456288604388522 26.72273992269257 27.02856842196253 24.792403050956384 42 22.724889648057637 26.327370852054173 26.261319412734117 24.686420087154076 43 23.22304716053976 25.757148682447607 26.349544592707847 24.670259564304786 44 22.790565261264916 25.196416122188587 27.435024362927763 24.577994253618733 45 22.654704121497065 26.107230706496722 25.44925313955739 25.788812032448828 46 23.40194039022025 27.366905879987446 26.231911019409537 22.99924271038276 47 21.863684110635692 26.50617012520647 28.29688759604706 23.333258168110778 48 21.90089089580033 25.230428385394642 27.84645999988725 25.02222071891777 49 23.209235550895315 24.962558323514877 28.28401555168455 23.544190573905265 50 22.387397798786456 25.186550686728264 27.502767019755296 24.923284494729977 51 21.943735072656583 25.425106311811653 25.503841882437833 27.12731673309393 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 270.0 1 708.0 2 1146.0 3 1519.5 4 1893.0 5 1457.0 6 1021.0 7 1145.5 8 1270.0 9 1288.0 10 1306.0 11 1413.5 12 1521.0 13 1516.5 14 1512.0 15 1650.0 16 1788.0 17 1650.5 18 1513.0 19 1591.5 20 1670.0 21 2072.5 22 2475.0 23 3744.5 24 5014.0 25 5123.0 26 8243.5 27 11255.0 28 12446.5 29 13638.0 30 15737.0 31 17836.0 32 20345.5 33 22855.0 34 25125.5 35 27396.0 36 31214.0 37 35032.0 38 37826.5 39 40621.0 40 47916.0 41 55211.0 42 58008.0 43 60805.0 44 66680.5 45 72556.0 46 80984.0 47 89412.0 48 94178.5 49 98945.0 50 96205.0 51 93465.0 52 83909.5 53 74354.0 54 66515.5 55 58677.0 56 56136.0 57 53595.0 58 52474.0 59 51353.0 60 48330.5 61 45308.0 62 41208.0 63 37108.0 64 31796.5 65 26485.0 66 21559.0 67 16633.0 68 13988.5 69 11344.0 70 10216.5 71 9089.0 72 7754.5 73 6420.0 74 5074.0 75 2857.0 76 1986.0 77 1368.5 78 751.0 79 585.5 80 420.0 81 371.0 82 322.0 83 201.5 84 81.0 85 44.5 86 8.0 87 4.0 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1064322.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.415483481199978 #Duplication Level Percentage of deduplicated Percentage of total 1 69.7646728335325 15.638088714713689 2 11.570643695946352 5.187231452666722 3 4.663582066208772 3.136093403049696 4 2.4973225771673846 2.2391477190289306 5 1.5267600048487413 1.7111531834221883 6 1.0664680132026343 1.4343237679903083 7 0.8280076931080556 1.2992134937019084 8 0.6351718507765058 1.1390147303043188 9 0.5454415796077192 1.100370304589081 >10 4.655448308173815 23.363051047034027 >50 1.8924440632483206 30.784794506128364 >100 0.3455472107216756 10.732043919357968 >500 0.0055185672473977675 0.8017750770449106 >1k 0.0029715362101372595 1.433698680967917 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC 3266 0.30686202108008664 No Hit CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT 3011 0.2829031063907351 No Hit TCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC 2431 0.2284083200384846 No Hit GCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC 2348 0.22060992819842115 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 1906 0.1790811427368785 No Hit TTTCTTGGGACTCAGTCTCTGTCTGTCTATCTCTGTGGCGTTCAGCCCCAC 1088 0.10222470267456654 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2973724117325396 0.0 2 0.0 0.0 0.0 1.1119755111704916 0.0 3 0.0 0.0 0.0 1.5351557141541752 0.0 4 0.0 0.0 0.0 1.9602150477017293 0.0 5 0.0 0.0 0.0 2.72004149120285 0.0 6 0.0 0.0 0.0 3.2479832231223256 0.0 7 0.0 0.0 0.0 3.7125042985111647 0.0 8 0.0 0.0 0.0 4.45119052316874 0.0 9 0.0 0.0 0.0 4.7934741553777895 0.0 10 0.0 0.0 0.0 5.495047551398919 0.0 11 0.0 0.0 0.0 6.685006980970045 0.0 12 0.0 0.0 0.0 7.789278056828667 0.0 13 0.0 0.0 0.0 8.152795864409455 0.0 14 0.0 0.0 0.0 8.285556438746921 0.0 15 0.0 0.0 0.0 8.500341062197343 0.0 16 0.0 0.0 0.0 9.001693096638048 0.0 17 0.0 0.0 0.0 9.6956560138755 0.0 18 0.0 0.0 0.0 10.461119849068233 0.0 19 0.0 0.0 0.0 10.964163101016421 0.0 20 0.0 0.0 0.0 11.460629395991063 0.0 21 0.0 0.0 0.0 12.128284485334326 0.0 22 0.0 0.0 0.0 12.849494795747903 0.0 23 0.0 0.0 0.0 13.518089450373102 0.0 24 0.0 0.0 0.0 14.056178487337478 0.0 25 9.395652819353541E-5 0.0 0.0 14.521169345367285 0.0 26 9.395652819353541E-5 0.0 0.0 14.95102046185271 0.0 27 9.395652819353541E-5 0.0 0.0 15.3770193606822 0.0 28 9.395652819353541E-5 0.0 0.0 15.814386999423107 0.0 29 9.395652819353541E-5 0.0 0.0 16.278062466058206 0.0 30 9.395652819353541E-5 0.0 0.0 16.788528283733683 0.0 31 1.8791305638707082E-4 0.0 0.0 17.250042750220327 0.0 32 1.8791305638707082E-4 0.0 0.0 17.742374957954453 0.0 33 3.7582611277414164E-4 0.0 0.0 18.212815294619485 0.0 34 4.6978264096767707E-4 0.0 0.0 18.64670654181723 0.0 35 5.637391691612124E-4 0.0 0.0 19.11461005222104 0.0 36 5.637391691612124E-4 0.0 0.0 19.57603056217949 0.0 37 5.637391691612124E-4 0.0 0.0 20.030686202108008 0.0 38 5.637391691612124E-4 0.0 0.0 20.478107189365623 0.0 39 5.637391691612124E-4 0.0 0.0 20.92101826326995 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAGCGG 30 2.1653486E-6 45.000004 15 ATCACGA 35 1.2118107E-7 45.000004 44 CGTAAGT 30 2.1653486E-6 45.000004 20 CCAGTCG 30 2.1653486E-6 45.000004 28 TCGAATC 30 2.1653486E-6 45.000004 45 TGCCGAT 30 2.1653486E-6 45.000004 20 GTCGCGA 20 7.0330524E-4 45.0 17 GTCGACT 20 7.0330524E-4 45.0 42 GCGCCTA 20 7.0330524E-4 45.0 15 CGCTATA 20 7.0330524E-4 45.0 36 TCGCTAA 20 7.0330524E-4 45.0 20 AACGCCA 20 7.0330524E-4 45.0 34 ACTACGG 20 7.0330524E-4 45.0 2 TCCGTGA 20 7.0330524E-4 45.0 26 ATAGTCG 20 7.0330524E-4 45.0 38 CGGTATC 20 7.0330524E-4 45.0 28 CGGTATA 40 6.8139343E-9 45.0 34 CGATCAA 20 7.0330524E-4 45.0 21 ACGACCG 20 7.0330524E-4 45.0 32 AGTCGTT 40 6.8139343E-9 45.0 26 >>END_MODULE