SRR3550136_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550136_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1460034
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC	3965	0.27156901825573926	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGCT	3829	0.26225416668378954	TruSeq Adapter, Index 19 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC	3740	0.25615841822861657	TruSeq Adapter, Index 13 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC	3616	0.2476654653247801	TruSeq Adapter, Index 13 (95% over 22bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	2533	0.17348911052756305	No Hit
TCCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTG	1470	0.10068258684386802	TruSeq Adapter, Index 19 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAC	20	7.0339127E-4	45.000004	9
GATCGAT	20	7.0339127E-4	45.000004	9
GCGAATC	20	7.0339127E-4	45.000004	24
TTCGTAC	20	7.0339127E-4	45.000004	28
TATGCGT	20	7.0339127E-4	45.000004	43
CGCTAGA	20	7.0339127E-4	45.000004	16
TAACACG	20	7.0339127E-4	45.000004	32
ACGCTAT	20	7.0339127E-4	45.000004	16
CGTAAGT	20	7.0339127E-4	45.000004	44
TATGTCG	30	2.165907E-6	45.000004	1
CGGCATA	25	3.8913262E-5	45.0	13
TAACGCG	25	3.8913262E-5	45.0	44
TCGGCAC	25	3.8913262E-5	45.0	5
TTCGATG	110	0.0	45.0	1
TTCGATA	35	1.2122291E-7	45.0	44
CGAACGA	90	0.0	42.5	22
TATGGGC	805	0.0	42.484474	4
TTATGGG	3020	0.0	42.46689	3
TACGGGA	600	0.0	42.375	4
TTACGGG	990	0.0	42.272728	3