##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550132_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2684627 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.226375582157225 33.0 31.0 34.0 30.0 34.0 2 32.370961403576736 34.0 31.0 34.0 30.0 34.0 3 32.44661623383807 34.0 31.0 34.0 30.0 34.0 4 35.93489821863521 37.0 35.0 37.0 35.0 37.0 5 31.74326116812503 37.0 35.0 37.0 0.0 37.0 6 33.326950820356046 37.0 35.0 37.0 17.0 37.0 7 35.16086815784837 37.0 35.0 37.0 32.0 37.0 8 35.64811387205746 37.0 35.0 37.0 35.0 37.0 9 37.706702644352454 39.0 37.0 39.0 35.0 39.0 10 37.46578798469955 39.0 37.0 39.0 35.0 39.0 11 37.39543929193888 39.0 37.0 39.0 35.0 39.0 12 37.13917054398991 39.0 37.0 39.0 34.0 39.0 13 37.02735910798781 39.0 37.0 39.0 33.0 39.0 14 38.10240826751724 40.0 37.0 41.0 33.0 41.0 15 38.18830362653732 40.0 37.0 41.0 33.0 41.0 16 38.340950158066654 40.0 37.0 41.0 34.0 41.0 17 38.29795982831134 40.0 37.0 41.0 34.0 41.0 18 38.277879198860774 40.0 37.0 41.0 34.0 41.0 19 38.29901882086413 40.0 37.0 41.0 34.0 41.0 20 38.150782585439245 40.0 37.0 41.0 34.0 41.0 21 38.14159583435613 40.0 37.0 41.0 34.0 41.0 22 38.15091966221006 40.0 37.0 41.0 34.0 41.0 23 38.0517677129821 40.0 37.0 41.0 34.0 41.0 24 38.0404581344075 40.0 37.0 41.0 34.0 41.0 25 37.96629401402876 40.0 36.0 41.0 34.0 41.0 26 37.93212390399113 40.0 36.0 41.0 34.0 41.0 27 37.81958834504756 40.0 36.0 41.0 33.0 41.0 28 37.77151649000029 40.0 36.0 41.0 33.0 41.0 29 37.74399087843488 40.0 36.0 41.0 33.0 41.0 30 37.64325248907949 40.0 36.0 41.0 33.0 41.0 31 37.46950619210788 39.0 36.0 41.0 33.0 41.0 32 37.437389253702655 39.0 35.0 41.0 33.0 41.0 33 37.41315609207536 39.0 35.0 41.0 33.0 41.0 34 37.30065182239469 39.0 35.0 41.0 32.0 41.0 35 37.200668100261225 39.0 35.0 41.0 32.0 41.0 36 37.17681562466592 39.0 35.0 41.0 32.0 41.0 37 37.08109543709424 39.0 35.0 41.0 32.0 41.0 38 37.12614601581523 39.0 35.0 41.0 32.0 41.0 39 37.11260707725878 39.0 35.0 41.0 32.0 41.0 40 36.97234960387421 39.0 35.0 41.0 32.0 41.0 41 36.88073538707612 39.0 35.0 41.0 31.0 41.0 42 36.86800885188147 39.0 35.0 41.0 32.0 41.0 43 36.81374023281447 39.0 35.0 41.0 32.0 41.0 44 36.77972321667033 39.0 35.0 41.0 32.0 41.0 45 36.773766709490744 39.0 35.0 41.0 32.0 41.0 46 36.667773958914964 39.0 35.0 40.0 31.0 41.0 47 36.541757197554816 38.0 35.0 40.0 31.0 41.0 48 36.53804085260261 38.0 35.0 40.0 31.0 41.0 49 36.512866033158424 38.0 35.0 40.0 31.0 41.0 50 36.393489672867034 38.0 35.0 40.0 31.0 41.0 51 35.726113907071635 37.0 34.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 14.0 10 17.0 11 31.0 12 26.0 13 25.0 14 30.0 15 60.0 16 111.0 17 197.0 18 372.0 19 737.0 20 1604.0 21 2996.0 22 4851.0 23 6688.0 24 9145.0 25 11774.0 26 14890.0 27 18400.0 28 22448.0 29 29063.0 30 38455.0 31 52121.0 32 70303.0 33 105272.0 34 176328.0 35 222388.0 36 233505.0 37 364163.0 38 564653.0 39 733230.0 40 730.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.46574216827887 4.4945163704306035 51.07018591409533 15.969555547195197 2 19.135693710895403 9.29495978398489 50.261581962782905 21.307764542336795 3 20.513911243535883 9.282742071803643 47.71538094491339 22.487965739747086 4 18.511621912466797 4.567599148783053 52.37468743330079 24.54609150544936 5 19.137742412633113 16.532389788227565 41.4039268769926 22.925940922146726 6 21.041694060292173 9.845054825120956 49.81742342604764 19.295827688539227 7 79.16716176958661 2.5454932845419496 12.980350715388022 5.306994230483415 8 79.2454221759671 6.418321800384187 8.388986626447547 5.947269397201175 9 74.28339206899133 5.156098035220536 10.204881348507634 10.355628547280498 10 39.73639540986513 26.498504261485863 17.556703407959468 16.20839692068954 11 32.351123638404886 23.018318745956144 24.620962241681994 20.00959537395698 12 27.297423440947288 20.232978361612247 29.60638479759013 22.86321339985033 13 25.036923192681886 21.944314796804175 32.29744765287691 20.72131435763702 14 20.327814627506914 26.08366078416108 30.42579099442865 23.16273359390336 15 17.10915520107635 23.388053535928826 36.421856742109796 23.080934520885023 16 20.28412140680996 23.75804906975904 30.644741336505966 25.313088186925036 17 20.50742989622022 23.923509671920904 29.890372107559077 25.6786883242998 18 21.79531830678899 22.642884840240377 30.483489885187034 25.078306967783607 19 23.416102125174188 24.341444826413504 28.249175770041795 23.993277278370513 20 25.472253687383763 25.77721225332234 29.256354793421952 19.494179265871946 21 23.584095667666308 27.967013667075534 28.08662059943523 20.362270065822923 22 21.635370574757683 22.714626650182687 29.986027854148826 25.6639749209108 23 21.77010065085392 26.267298958104796 27.92406542882866 24.038534962212626 24 22.91823035378844 23.29660694018201 28.370421663791657 25.4147410422379 25 21.927552691677466 27.668424701085105 25.132094700679087 25.27192790655834 26 21.48570360053743 24.738781216161502 27.67073414668034 26.10478103662073 27 22.325745811243053 24.90919595161637 28.661151064933787 24.10390717220679 28 18.78674393127984 24.736360023198753 30.63893047339537 25.837965572126038 29 23.40109072880516 22.45295156459352 28.990172564009825 25.1557851425915 30 22.552034230453614 23.952526738351363 31.057834105073066 22.437604926121953 31 23.975621194303713 25.23188509986676 25.065940259112345 25.726553446717176 32 25.878865108635203 26.857325058564935 25.04359078561007 22.220219047189797 33 23.68496629140659 23.78192575728397 26.891594251268426 25.641513700041013 34 23.39770105865731 25.186217675677103 27.21558711880645 24.200494146859135 35 22.993622577736126 24.84043407147436 27.390434499839273 24.775508850950242 36 24.967490828334814 25.509689055500072 26.58108556607678 22.941734550088334 37 22.062469013386217 26.207104376138656 28.92949374345114 22.800932867023985 38 22.560638777751993 25.414405800135363 26.124485822425235 25.900469599687405 39 25.479070276801952 23.96705389612784 26.939645619298325 23.61423020777188 40 22.904820669687073 24.182949810159847 30.55206551971652 22.360164000436562 41 21.126733806968343 27.266879160494177 26.19585514114251 25.410531891394967 42 23.54606431358993 24.542403842321484 27.60521294019616 24.30631890389242 43 25.67731010676716 21.646061072916275 27.51842248476232 25.15820633555425 44 23.05035299130941 21.253753314706287 29.008797125261722 26.687096568722584 45 22.65510255242162 20.946634299662488 27.27056682362205 29.12769632429384 46 24.6092660172158 23.296532441937 28.01186161057011 24.08233993027709 47 19.004688547049554 24.42197742926671 33.070664937810726 23.50266908587301 48 21.03457947789395 24.440937232621142 29.21932916565318 25.30515412383173 49 23.36436309401641 21.040613835739563 31.849079965298717 23.745943104945304 50 22.659758692734595 21.68967979536822 29.117154822625267 26.533406689271917 51 20.56270759401585 21.840724987121117 26.977118236537144 30.619449182325887 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 629.0 1 1536.5 2 2444.0 3 3951.5 4 5459.0 5 4134.0 6 2809.0 7 2764.5 8 2720.0 9 3104.0 10 3488.0 11 3686.5 12 3885.0 13 4289.0 14 4693.0 15 4343.0 16 3993.0 17 4169.0 18 4345.0 19 5135.5 20 5926.0 21 6201.0 22 6476.0 23 7233.0 24 7990.0 25 10336.5 26 15855.0 27 19027.0 28 22639.5 29 26252.0 30 30978.5 31 35705.0 32 42046.0 33 48387.0 34 54027.0 35 59667.0 36 63074.5 37 66482.0 38 71492.5 39 76503.0 40 89741.5 41 102980.0 42 118778.0 43 134576.0 44 155944.0 45 177312.0 46 243304.5 47 309297.0 48 309252.0 49 309207.0 50 299480.5 51 289754.0 52 249572.0 53 209390.0 54 187959.0 55 166528.0 56 150887.5 57 135247.0 58 127762.0 59 120277.0 60 110414.5 61 100552.0 62 86591.5 63 72631.0 64 61706.5 65 50782.0 66 42748.0 67 34714.0 68 29643.0 69 24572.0 70 20991.0 71 17410.0 72 15136.0 73 12862.0 74 10353.5 75 6111.0 76 4377.0 77 3344.0 78 2311.0 79 1752.0 80 1193.0 81 1040.5 82 888.0 83 506.5 84 125.0 85 85.5 86 46.0 87 88.0 88 130.0 89 92.5 90 55.0 91 29.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2684627.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.71729754055011 #Duplication Level Percentage of deduplicated Percentage of total 1 64.37971501717146 14.625331416209061 2 13.57531703230847 6.1678903246049845 3 6.236561612947437 4.2503347737390005 4 3.5163246673539685 3.19525574869824 5 2.1914622113611197 2.4892049552181237 6 1.4724962926425136 2.007068184439016 7 1.012479044800884 1.6100551400019554 8 0.7512265660655131 1.365266993734079 9 0.5764120916313963 1.1785072492405138 >10 4.597001078652138 23.91536261111412 >50 1.4625869150021387 22.76083157357984 >100 0.21171341425445972 7.6222561090629135 >500 0.00896744048676084 1.3905015987117908 >1k 0.00632995799065471 2.8962824945963783 >5k 3.5166433281415055E-4 0.6372316797635574 >10k+ 0.0010549929984424516 3.8886191472865343 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGC 24496 0.912454504853002 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCG 19593 0.7298220572168872 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC 18873 0.7030026890141535 No Hit CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT 12590 0.46896645232279943 No Hit CCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC 10924 0.4069094142314742 No Hit GCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC 10875 0.4050842072287882 No Hit TCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC 9161 0.3412392112572808 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCGTAAGT 6792 0.2529960400457866 No Hit GAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT 4592 0.17104797053743406 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTC 4357 0.16229442674904185 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT 4191 0.15611107241341163 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTA 4117 0.15335463734813065 No Hit TCCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG 3662 0.13640628660890322 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 2860 0.10653249036085832 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC 2825 0.10522877107322544 No Hit CGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG 2800 0.10429754301063052 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCG 2703 0.10068437812776225 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.724912250379662E-5 0.0 0.0 0.4854305644694775 0.0 2 3.724912250379662E-5 0.0 0.0 1.7151358456873151 0.0 3 3.724912250379662E-5 0.0 0.0 2.392101398071315 0.0 4 3.724912250379662E-5 0.0 0.0 3.315171902837899 0.0 5 3.724912250379662E-5 0.0 0.0 5.324911058407742 0.0 6 3.724912250379662E-5 0.0 0.0 6.231517451027647 0.0 7 3.724912250379662E-5 0.0 0.0 7.190347113397876 0.0 8 3.724912250379662E-5 0.0 0.0 8.56875089165087 0.0 9 3.724912250379662E-5 0.0 0.0 9.123092332752371 0.0 10 3.724912250379662E-5 0.0 0.0 11.086940569397536 0.0 11 3.724912250379662E-5 0.0 0.0 13.235581702784037 0.0 12 3.724912250379662E-5 0.0 0.0 16.22731947492147 0.0 13 3.724912250379662E-5 0.0 0.0 16.902124578200247 0.0 14 3.724912250379662E-5 0.0 0.0 17.173447186517905 0.0 15 3.724912250379662E-5 0.0 0.0 17.71881158909599 0.0 16 3.724912250379662E-5 0.0 0.0 18.555575877021276 0.0 17 3.724912250379662E-5 0.0 0.0 19.641760289231986 0.0 18 3.724912250379662E-5 0.0 0.0 20.806652097293217 0.0 19 3.724912250379662E-5 0.0 0.0 21.9347417723207 0.0 20 7.449824500759324E-5 0.0 0.0 22.850101708728996 0.0 21 7.449824500759324E-5 0.0 0.0 24.074890105776333 0.0 22 4.097403475417628E-4 0.0 0.0 25.345532172625845 0.0 23 4.097403475417628E-4 0.0 0.0 26.468853959972837 0.0 24 4.097403475417628E-4 0.0 0.0 27.341787145849313 0.0 25 4.097403475417628E-4 0.0 0.0 28.15061459189675 0.0 26 4.097403475417628E-4 0.0 0.0 28.860024129981557 0.0 27 4.097403475417628E-4 0.0 0.0 29.5913361520986 0.0 28 4.469894700455594E-4 0.0 0.0 30.281674139461458 0.0 29 4.469894700455594E-4 0.0 0.0 31.051315508634904 0.0 30 4.469894700455594E-4 0.0 0.0 31.92760111553672 0.0 31 4.469894700455594E-4 0.0 0.0 32.65850339730622 0.0 32 4.469894700455594E-4 0.0 0.0 33.40937120873775 0.0 33 4.469894700455594E-4 0.0 0.0 34.12537384150573 0.0 34 4.469894700455594E-4 0.0 0.0 34.85031626367462 0.0 35 4.84238592549356E-4 0.0 0.0 35.62982865031157 0.0 36 4.84238592549356E-4 0.0 0.0 36.34367083397433 0.0 37 4.84238592549356E-4 0.0 0.0 37.072710659618636 0.0 38 4.84238592549356E-4 0.0 0.0 37.81046677992883 0.0 39 4.84238592549356E-4 0.0 0.0 38.801293438529825 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCGAT 20 7.0349727E-4 45.0 22 TCGATCG 20 7.0349727E-4 45.0 2 AATTCGG 20 7.0349727E-4 45.0 13 CGATCGG 25 3.8922033E-5 45.0 3 TATGGGA 3005 0.0 42.529118 4 TACGGGA 1105 0.0 42.352943 4 TCTACGG 485 0.0 42.216496 2 ACGGGTA 240 0.0 42.187504 5 ACGGGAG 975 0.0 42.0 5 CGTATGG 345 0.0 41.739132 2 TAATACG 750 0.0 41.7 4 TTACGGG 1715 0.0 41.588924 3 CCGATGA 1530 0.0 41.47059 18 TCTTACG 315 0.0 41.428574 1 AATACGG 750 0.0 41.4 5 TTATGGG 5030 0.0 41.287277 3 CCGATCG 55 6.184564E-11 40.909092 40 TATCCGA 50 1.0822987E-9 40.5 30 TTTACGG 1075 0.0 40.39535 2 CGATCGA 45 1.9299478E-8 40.0 41 >>END_MODULE