##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550117_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 448125 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.610773779637377 31.0 31.0 34.0 30.0 34.0 2 31.70377238493724 31.0 31.0 34.0 30.0 34.0 3 31.737446025104603 31.0 31.0 34.0 30.0 34.0 4 35.55929037656904 37.0 35.0 37.0 33.0 37.0 5 32.97934728033473 37.0 35.0 37.0 28.0 37.0 6 34.02631408647141 37.0 35.0 37.0 28.0 37.0 7 35.325286471408646 37.0 35.0 37.0 32.0 37.0 8 35.27403291492329 37.0 35.0 37.0 33.0 37.0 9 37.359689818688985 39.0 37.0 39.0 34.0 39.0 10 36.81916652719665 39.0 37.0 39.0 32.0 39.0 11 36.75154476987448 39.0 37.0 39.0 32.0 39.0 12 37.10056345885634 39.0 37.0 39.0 33.0 39.0 13 37.04714086471409 39.0 37.0 39.0 33.0 39.0 14 37.97062649930265 40.0 37.0 41.0 33.0 41.0 15 38.101656903765694 40.0 37.0 41.0 33.0 41.0 16 38.054770432357046 40.0 37.0 41.0 33.0 41.0 17 38.01919330543933 39.0 37.0 41.0 33.0 41.0 18 37.916246582984655 39.0 37.0 40.0 33.0 41.0 19 37.70506666666667 39.0 37.0 40.0 33.0 41.0 20 37.5460820083682 39.0 35.0 40.0 33.0 41.0 21 37.45045913528591 39.0 35.0 40.0 33.0 41.0 22 37.41643737796374 39.0 35.0 40.0 33.0 41.0 23 37.13367252440725 39.0 35.0 40.0 32.0 41.0 24 36.85465216178522 39.0 35.0 40.0 32.0 41.0 25 36.66090711297071 38.0 35.0 40.0 31.0 41.0 26 36.988846861924685 39.0 35.0 40.0 32.0 41.0 27 36.8856390516039 39.0 35.0 40.0 32.0 41.0 28 36.97650209205021 39.0 35.0 40.0 32.0 41.0 29 37.04326248256625 39.0 35.0 40.0 33.0 41.0 30 36.811378521617854 39.0 35.0 40.0 32.0 41.0 31 36.636556764295676 39.0 35.0 40.0 31.0 41.0 32 36.401530822873085 39.0 35.0 40.0 31.0 41.0 33 36.2812050209205 39.0 35.0 40.0 30.0 41.0 34 36.1869009762901 39.0 35.0 40.0 30.0 41.0 35 35.986769316596934 39.0 35.0 40.0 30.0 41.0 36 35.87792691771269 39.0 35.0 40.0 29.0 41.0 37 35.794242677824265 39.0 35.0 40.0 28.0 41.0 38 35.67195536959554 39.0 35.0 40.0 27.0 41.0 39 35.626771548117155 39.0 35.0 40.0 27.0 41.0 40 35.55058521617852 39.0 35.0 40.0 25.0 41.0 41 35.462377684797765 39.0 35.0 40.0 25.0 41.0 42 35.53930711297071 39.0 35.0 40.0 25.0 41.0 43 35.40148619246862 39.0 35.0 40.0 24.0 41.0 44 35.28358158995816 39.0 35.0 40.0 24.0 41.0 45 35.30313863319386 39.0 35.0 40.0 24.0 41.0 46 35.212840167364014 39.0 35.0 40.0 23.0 41.0 47 35.13344490934449 38.0 35.0 40.0 23.0 41.0 48 35.09112189679219 38.0 35.0 40.0 23.0 41.0 49 35.14052329149233 39.0 35.0 40.0 23.0 41.0 50 35.06855230125523 39.0 35.0 40.0 23.0 41.0 51 34.22577182705718 38.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 6.0 10 16.0 11 12.0 12 17.0 13 15.0 14 20.0 15 39.0 16 69.0 17 118.0 18 180.0 19 376.0 20 594.0 21 985.0 22 1624.0 23 2387.0 24 3464.0 25 4866.0 26 6537.0 27 7339.0 28 7205.0 29 7507.0 30 8280.0 31 10031.0 32 12635.0 33 17037.0 34 25476.0 35 40026.0 36 48767.0 37 63261.0 38 98785.0 39 80440.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.66516039051604 24.470850767085075 23.89690376569038 17.967085076708507 2 33.505829846582984 26.381032078103207 24.610097629009765 15.503040446304045 3 26.329707112970713 24.925634588563458 35.46845188284519 13.276206415620642 4 23.85294281729428 27.107615062761507 33.619414225941426 15.42002789400279 5 17.938744769874475 34.363179916317996 31.601896792189677 16.09617852161785 6 19.819693165969316 34.146276150627614 32.63375174337517 13.400278940027894 7 63.24596931659693 9.760669456066944 20.95754532775453 6.03581589958159 8 60.172496513249655 9.300529986052998 21.501589958158995 9.025383542538354 9 54.233082287308235 12.631520223152023 24.849539748953976 8.285857740585774 10 20.779246861924687 37.73366806136681 29.11018131101813 12.376903765690377 11 18.169930264993024 26.87910739191074 35.96697350069735 18.983988842398887 12 17.65712691771269 23.273863319386333 40.95241283124128 18.116596931659693 13 18.679832635983264 25.905941422594143 41.0818410041841 14.332384937238492 14 13.467670850767085 29.62588563458856 38.2355369595537 18.670906555090657 15 11.176122733612273 29.361450488145046 42.299358437935844 17.163068340306832 16 11.43252440725244 31.037099023709903 36.70136680613668 20.829009762900977 17 12.250599721059972 30.46493723849372 35.22610878661088 22.058354253835425 18 10.946276150627614 29.10058577405858 41.24987447698744 18.703263598326362 19 12.718772663877267 29.418577405857743 38.148284518828454 19.71436541143654 20 12.303040446304045 32.27581589958159 38.56357043235704 16.85757322175732 21 13.818465829846582 31.298633193863317 38.58856345885634 16.294337517433753 22 10.822873082287309 30.150739191073917 35.110069735006974 23.9163179916318 23 11.574225941422595 29.308563458856344 36.61344490934449 22.50376569037657 24 14.653277545327756 27.809874476987446 35.40284518828452 22.134002789400277 25 11.575118549511854 31.321171548117157 33.312580195258015 23.791129707112972 26 10.652161785216178 30.63497907949791 37.331324965132495 21.38153417015342 27 14.058577405857742 28.996150627615062 34.85545327754533 22.089818688981868 28 9.09076708507671 28.927196652719665 35.95358437935844 26.02845188284519 29 11.820139470013947 28.103988842398884 36.354588563458854 23.721283124128313 30 14.232189679218967 28.405244072524404 34.38750348675035 22.975062761506276 31 12.150404463040445 31.271854951185496 28.913807531380755 27.663933054393308 32 11.3497350069735 32.598940027894 30.028228730822875 26.023096234309623 33 12.048200836820083 27.637601115760113 32.86047419804742 27.453723849372384 34 11.313361227336124 25.578800557880054 33.31057182705718 29.79726638772664 35 11.18794979079498 26.151408647140865 32.39654114365411 30.264100418410038 36 12.229623430962343 25.63101813110181 35.322956764295675 26.816401673640165 37 11.480725244072525 28.044853556485354 31.693165969316595 28.781255230125524 38 11.61483960948396 31.307336122733613 29.744825662482565 27.332998605299863 39 15.791576011157602 26.01461645746165 35.54097629009763 22.652831241283124 40 15.821478382147838 23.766806136680614 34.5936959553696 25.818019525801954 41 12.999721059972105 24.682622036262202 30.153863319386332 32.163793584379356 42 14.700585774058577 23.561059972105998 34.101422594142264 27.636931659693165 43 17.33712691771269 23.307336122733613 34.42454672245467 24.930990237099024 44 14.63029288702929 24.762287308228732 32.32758716875871 28.279832635983265 45 16.57439330543933 21.88429567642957 31.482510460251046 30.058800557880055 46 17.979358437935844 22.762175732217575 33.805299860529985 25.4531659693166 47 11.838437935843793 23.67397489539749 37.75531380753138 26.73227336122734 48 12.653165969316596 23.141534170153417 35.35129707112971 28.85400278940028 49 16.827224546722455 20.20730822873082 38.88758716875872 24.077880055788007 50 16.398549511854952 19.219191073919106 35.35196652719665 29.03029288702929 51 14.86928870292887 18.467615062761507 31.47068340306834 35.192412831241285 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 9184.0 1 8514.5 2 7845.0 3 11956.5 4 16068.0 5 10633.0 6 5198.0 7 5203.5 8 5209.0 9 5552.5 10 5896.0 11 6020.0 12 6144.0 13 5914.0 14 5684.0 15 5106.5 16 4529.0 17 4482.5 18 4436.0 19 4490.0 20 4544.0 21 4166.0 22 3788.0 23 4030.0 24 4272.0 25 4960.5 26 6524.0 27 7399.0 28 6912.0 29 6425.0 30 6749.5 31 7074.0 32 7107.5 33 7141.0 34 7446.5 35 7752.0 36 8278.0 37 8804.0 38 9790.0 39 10776.0 40 12240.5 41 13705.0 42 17654.0 43 21603.0 44 25522.0 45 29441.0 46 39023.0 47 48605.0 48 58115.0 49 67625.0 50 63288.5 51 58952.0 52 44078.0 53 29204.0 54 21420.0 55 13636.0 56 10269.5 57 6903.0 58 5708.0 59 4513.0 60 3941.5 61 3370.0 62 3052.0 63 2734.0 64 2212.0 65 1690.0 66 1398.0 67 1106.0 68 832.0 69 558.0 70 415.5 71 273.0 72 229.5 73 186.0 74 145.0 75 73.0 76 42.0 77 33.5 78 25.0 79 19.5 80 14.0 81 14.0 82 14.0 83 9.5 84 5.0 85 2.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 448125.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.93056455763693 #Duplication Level Percentage of deduplicated Percentage of total 1 70.11906914149044 25.194177405097296 2 11.635666212323843 8.361521120260331 3 5.173070028147371 5.576139798225773 4 2.9286220392356266 4.209081729826959 5 1.9623596165394264 3.5254344443684755 6 1.4139556945073735 3.048253581788133 7 1.0449625053985456 2.628226493237273 8 0.878114000912107 2.5240905438989847 9 0.6824283003407022 2.2068030691215044 >10 3.9354122513378478 23.23220865715287 >50 0.13303003972362035 3.321425546845727 >100 0.07880926523911158 5.188056736724924 >500 0.006304741219128928 1.4987417417767923 >1k 0.00693521534104182 5.719502946853152 >5k 0.0012609482438257853 3.7663361848217876 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9338 2.0837935843793587 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7288 1.6263319386331938 No Hit CCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC 4046 0.9028730822873082 No Hit GCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC 3797 0.8473082287308229 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCC 3252 0.7256903765690377 No Hit CTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGCT 3062 0.6832914923291492 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2731 0.6094281729428174 No Hit TCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC 2092 0.466834030683403 No Hit ACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC 1463 0.32647140864714086 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 1367 0.30504881450488147 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1339 0.2988005578800558 No Hit TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1051 0.23453277545327755 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCG 1048 0.23386331938633192 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 837 0.18677824267782425 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGC 742 0.16557880055788005 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 733 0.16357043235704324 No Hit ACCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTG 720 0.1606694560669456 No Hit GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 635 0.14170153417015344 No Hit CGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTG 632 0.1410320781032078 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTC 602 0.13433751743375175 No Hit AGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTG 596 0.13299860529986052 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 592 0.1321059972105997 No Hit GCCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTG 527 0.11760111576011158 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGT 498 0.11112970711297072 No Hit AGGTACAGGAGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGC 490 0.1093444909344491 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7270292887029288 0.0 2 0.0 0.0 0.0 3.433863319386332 0.0 3 0.0 0.0 0.0 4.4521059972106 0.0 4 0.0 0.0 0.0 5.861087866108787 0.0 5 0.0 0.0 0.0 9.3842119944212 0.0 6 0.0 0.0 0.0 11.271854951185496 0.0 7 0.0 0.0 0.0 13.342705718270572 0.0 8 0.0 0.0 0.0 16.508340306834032 0.0 9 0.0 0.0 0.0 17.526136680613668 0.0 10 0.0 0.0 0.0 20.545606694560668 0.0 11 0.0 0.0 0.0 25.152357043235703 0.0 12 0.0 0.0 0.0 29.002845188284518 0.0 13 0.0 0.0 0.0 30.369651324965133 0.0 14 0.0 0.0 0.0 30.911910739191075 0.0 15 0.0 0.0 0.0 31.981478382147838 0.0 16 0.0 0.0 0.0 34.08490934449093 0.0 17 0.0 0.0 0.0 36.597154811715484 0.0 18 0.0 0.0 0.0 39.18147838214784 0.0 19 0.0 0.0 0.0 40.753584379358436 0.0 20 0.0 0.0 0.0 42.49149232914923 0.0 21 0.0 0.0 0.0 44.39676429567643 0.0 22 0.0 0.0 0.0 46.24758716875872 0.0 23 0.0 0.0 0.0 47.83062761506276 0.0 24 0.0 0.0 0.0 48.889930264993026 0.0 25 0.0 0.0 0.0 49.6836820083682 0.0 26 0.0 0.0 0.0 50.426108786610875 0.0 27 0.0 0.0 0.0 51.055174337517435 0.0 28 0.0 0.0 0.0 51.70008368200837 0.0 29 0.0 0.0 0.0 52.319330543933056 0.0 30 0.0 0.0 0.0 52.96825662482566 0.0 31 0.0 0.0 0.0 53.51854951185495 0.0 32 0.0 0.0 0.0 53.96150627615063 0.0 33 0.0 0.0 0.0 54.39085076708508 0.0 34 0.0 0.0 0.0 54.84050209205021 0.0 35 0.0 0.0 0.0 55.24239888423989 0.0 36 0.0 0.0 0.0 55.61751743375174 0.0 37 0.0 0.0 0.0 55.950460251046024 0.0 38 0.0 0.0 0.0 56.3155369595537 0.0 39 0.0 0.0 0.0 56.654504881450485 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGA 20 7.028674E-4 45.000004 13 GTACCGG 20 7.028674E-4 45.000004 2 TCGCAAC 20 7.028674E-4 45.000004 11 CGACGGT 20 7.028674E-4 45.000004 28 CAACGAG 20 7.028674E-4 45.000004 14 GGGTCAA 40 6.7993824E-9 45.000004 7 GAGTACG 20 7.028674E-4 45.000004 1 GATCCTA 20 7.028674E-4 45.000004 9 TTCACTG 40 6.7993824E-9 45.000004 19 ACTTCCG 20 7.028674E-4 45.000004 28 CGTCTCG 20 7.028674E-4 45.000004 43 CTAAGCC 20 7.028674E-4 45.000004 10 TTGAGCG 20 7.028674E-4 45.000004 1 CCGTAGG 20 7.028674E-4 45.000004 2 TAACAGT 20 7.028674E-4 45.000004 24 GTCACGT 20 7.028674E-4 45.000004 39 CGGGCGG 20 7.028674E-4 45.000004 6 GTCAAGT 20 7.028674E-4 45.000004 35 AACGAGC 20 7.028674E-4 45.000004 15 CGGTCTA 20 7.028674E-4 45.000004 31 >>END_MODULE