SRR3550109_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550109_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	897647
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGCT	4094	0.4560812880787214	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	3889	0.4332438029648626	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	3139	0.34969202815806216	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCC	1091	0.12153998175229237	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	997	0.11106815930984006	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	941	0.1048296267909323	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTTA	20	7.0324604E-4	45.0	40
CACGGTA	20	7.0324604E-4	45.0	29
CGACGCA	25	3.89012E-5	45.0	43
CGTGCCC	20	7.0324604E-4	45.0	38
GCGAACC	20	7.0324604E-4	45.0	19
TAGAACG	40	6.8121153E-9	45.0	1
TTCACGT	20	7.0324604E-4	45.0	43
TGTATCG	20	7.0324604E-4	45.0	21
TACGGGT	20	7.0324604E-4	45.0	4
CGACACC	35	1.2115379E-7	45.0	35
TCGATGT	20	7.0324604E-4	45.0	44
CCCACGA	45	3.8380676E-10	45.0	39
TCCACGA	25	3.89012E-5	45.0	30
CATACGG	35	1.2115379E-7	45.0	2
ACGTCGT	20	7.0324604E-4	45.0	32
TAGATCG	20	7.0324604E-4	45.0	1
TATAGCG	40	6.8121153E-9	45.0	1
GCTACGC	20	7.0324604E-4	45.0	12
CGCGTCT	20	7.0324604E-4	45.0	13
TAAGCGC	20	7.0324604E-4	45.0	28