SRR3550107_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550107_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1040626
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGCT	4597	0.44175332924605	TruSeq Adapter, Index 15 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	3781	0.3633389901847542	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	3387	0.3254771647066285	TruSeq Adapter, Index 14 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	1285	0.12348336482079056	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCC	1187	0.11406595645313494	No Hit
ACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	1097	0.10541731611549202	TruSeq Adapter, Index 15 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGTT	35	1.2117744E-7	45.000004	45
ATCTCCG	35	1.2117744E-7	45.000004	24
TTGGACG	30	2.1653032E-6	45.000004	1
CGAAACC	35	1.2117744E-7	45.000004	31
TTATGCG	30	2.1653032E-6	45.000004	1
CCGGAAC	30	2.1653032E-6	45.000004	28
ATAGACG	35	1.2117744E-7	45.000004	1
CCCGTCG	30	2.1653032E-6	45.000004	40
CGTCGCA	30	2.1653032E-6	45.000004	42
TAGGCCG	30	2.1653032E-6	45.000004	1
CGACTTA	35	1.2117744E-7	45.000004	29
TCGAACG	35	1.2117744E-7	45.000004	1
TATCCGA	30	2.1653032E-6	45.000004	30
ACGCGTT	30	2.1653032E-6	45.000004	26
ACGCGAT	40	6.8139343E-9	45.0	26
GTCGACG	20	7.0329796E-4	45.0	33
CTCCGAT	20	7.0329796E-4	45.0	11
TTTACGC	20	7.0329796E-4	45.0	26
CGCGGAC	25	3.8905506E-5	45.0	40
ACGTTCG	20	7.0329796E-4	45.0	41