SRR3550105_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550105_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	655551
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGCT	3940	0.6010211257400263	Illumina Single End Adapter 2 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	3080	0.46983377342113736	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	2952	0.45030821400623294	Illumina Single End Adapter 2 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1127	0.17191644891091618	No Hit
TCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	913	0.13927215426412287	Illumina Single End Adapter 2 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	841	0.1282890270932391	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCC	792	0.12081439887972102	No Hit
TGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGCTT	783	0.11944150798336055	Illumina Single End Adapter 2 (95% over 23bp)
AAAACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTC	726	0.11074653230641095	No Hit
GGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTG	677	0.10327190409289286	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACCG	45	3.8380676E-10	45.000004	1
ATCGTGC	45	3.8380676E-10	45.000004	17
ATATACG	45	3.8380676E-10	45.000004	38
TCCGGAC	20	7.0310675E-4	45.0	37
TCACGCG	20	7.0310675E-4	45.0	20
AACGTTA	20	7.0310675E-4	45.0	39
AGCGTTA	25	3.888965E-5	45.0	12
GTTTCGT	20	7.0310675E-4	45.0	43
ACGCATG	50	2.1827873E-11	45.0	1
ACGTTCT	20	7.0310675E-4	45.0	28
ACGTTAC	20	7.0310675E-4	45.0	40
CGTGCCG	25	3.888965E-5	45.0	44
ACCGCGT	25	3.888965E-5	45.0	24
CACGCGA	20	7.0310675E-4	45.0	21
ATTCGCG	25	3.888965E-5	45.0	1
TGACGTT	20	7.0310675E-4	45.0	26
CGCGACA	20	7.0310675E-4	45.0	39
CCTCGAG	25	3.888965E-5	45.0	13
ATCGTAA	25	3.888965E-5	45.0	11
CCCGTTT	20	7.0310675E-4	45.0	22