SRR3550102_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550102_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1185835
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	3708	0.3126910573562089	No Hit
CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT	3532	0.29784919487112455	No Hit
CCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	3192	0.26917741507039344	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1617	0.13635961158171248	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1472	0.12413194078434184	No Hit
TCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	1224	0.10321840728263207	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAT	30	2.1655596E-6	45.000004	3
GGTACGA	30	2.1655596E-6	45.000004	8
CTCGTAG	45	3.8562575E-10	45.000004	1
TATTGCG	30	2.1655596E-6	45.000004	1
GAACGTA	30	2.1655596E-6	45.000004	2
ACGTATC	30	2.1655596E-6	45.000004	11
CCGAACG	30	2.1655596E-6	45.000004	1
CACGTCG	30	2.1655596E-6	45.000004	18
AGCGTAC	35	1.2119744E-7	45.0	32
CAAACGT	20	7.0333766E-4	45.0	36
CGTATCA	20	7.0333766E-4	45.0	39
CGAGTTA	20	7.0333766E-4	45.0	26
GAGTCAT	25	3.890881E-5	45.0	7
GCGCGAA	40	6.8157533E-9	45.0	20
ATTCGTT	35	1.2119744E-7	45.0	11
CGTTCGA	25	3.890881E-5	45.0	40
CCCCGTA	20	7.0333766E-4	45.0	36
TCAATCG	25	3.890881E-5	45.0	18
TCGGACA	20	7.0333766E-4	45.0	35
TAACACG	20	7.0333766E-4	45.0	1