SRR3550101_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550101_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	900339
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCT	7338	0.8150263400785704	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	6145	0.6825206949826677	No Hit
GCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	6008	0.6673042043052673	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCC	2792	0.3101054158489191	No Hit
TCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	2433	0.270231546117629	No Hit
ACTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	1888	0.20969879123307997	No Hit
CGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	1812	0.20125752633174837	No Hit
TGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCTT	1663	0.18470820435413773	Illumina Single End Adapter 2 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTC	1573	0.1747119696025608	No Hit
GCCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	1495	0.16604856615119415	No Hit
AGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	1399	0.15538591574951213	No Hit
GGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	1333	0.14805534359835573	No Hit
ACCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTG	1288	0.14305722622256728	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTC	1152	0.1279518048201844	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCT	955	0.10607115764173272	No Hit
GGCCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCT	931	0.1034054950413122	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	25	3.8901293E-5	45.000004	21
CGTTATG	30	2.1649757E-6	45.000004	1
CAATGCG	25	3.8901293E-5	45.000004	1
CCTATCG	50	2.1827873E-11	45.000004	29
GCGTAAG	30	2.1649757E-6	45.000004	1
TACGATG	20	7.0324726E-4	45.0	1
TTCGAAG	45	3.8380676E-10	45.0	1
TTAACGG	70	0.0	41.785713	2
CGGTCAA	200	0.0	41.625004	29
TACCGAT	130	0.0	41.538464	31
CTCGACC	245	0.0	41.32653	28
CGCTCGA	255	0.0	40.588234	26
TTACGCT	95	0.0	40.263157	30
GCGATCG	180	0.0	40.0	31
CTGATCG	90	0.0	40.0	30
GTCGCTC	170	0.0	39.705883	30
CGACCGA	255	0.0	39.705883	30
TAACCGA	85	0.0	39.705883	31
TCGACCG	255	0.0	39.705883	29
ACGGTCA	200	0.0	39.375004	28