SRR3550089_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550089_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1188777
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	4589	0.38602698403485264	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	3789	0.3187309310324813	No Hit
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	3387	0.28491466439878965	No Hit
TCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	1718	0.14451827382259247	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1408	0.11844105328417356	No Hit
ACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	1382	0.1162539315615965	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATCG	20	7.0333836E-4	45.000004	32
AGATCGC	30	2.165565E-6	45.000004	26
GGTAATC	20	7.0333836E-4	45.000004	8
TCCGCAT	20	7.0333836E-4	45.000004	32
TCACACG	30	2.165565E-6	45.000004	1
ATTACGG	60	0.0	45.000004	2
GCCGGAT	60	0.0	45.000004	19
CGATTCT	35	1.2119744E-7	45.000004	10
CGACACG	20	7.0333836E-4	45.000004	12
TCTAGCG	30	2.165565E-6	45.000004	1
CACCTCG	20	7.0333836E-4	45.000004	12
ACGATTC	20	7.0333836E-4	45.000004	1
CTAACGT	20	7.0333836E-4	45.000004	45
ACGATAG	20	7.0333836E-4	45.000004	1
GCCGAAC	30	2.165565E-6	45.000004	9
CGGATTA	20	7.0333836E-4	45.000004	7
CACTACG	20	7.0333836E-4	45.000004	12
TATTCGC	35	1.2119744E-7	45.000004	13
AGCGCAT	20	7.0333836E-4	45.000004	10
GCTAGAT	20	7.0333836E-4	45.000004	36