SRR3550087_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550087_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1237586
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	8088	0.6535303405177498	No Hit
CCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	5938	0.47980503981137473	No Hit
CTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGCT	4458	0.36021739095303273	No Hit
TCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	2787	0.2251964711947291	No Hit
ACTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	2184	0.17647258453149922	No Hit
GCCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTG	1563	0.1262942534902625	No Hit
ACCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTG	1494	0.12071888337456951	No Hit
AGCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTG	1329	0.1073864765761733	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1315	0.10625524205994574	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	50	2.1827873E-11	45.000004	1
CTTCGAC	35	1.212029E-7	45.000004	25
AACCGGT	25	3.890979E-5	45.000004	11
GGTACTC	25	3.890979E-5	45.000004	8
ATCTCGA	30	2.1656379E-6	45.000004	21
TCGCACC	35	1.212029E-7	45.000004	39
AGATCGG	45	3.8562575E-10	45.000004	2
GTCGATA	25	3.890979E-5	45.000004	1
CGACGGT	55	1.8189894E-12	45.000004	28
TAGAACG	30	2.1656379E-6	45.000004	1
GACCGAA	35	1.212029E-7	45.000004	9
ATTCGGA	35	1.212029E-7	45.000004	12
CGATTTT	50	2.1827873E-11	45.000004	37
CGTTCAA	60	0.0	45.000004	9
ATCGTGC	25	3.890979E-5	45.000004	38
CGTTAGC	35	1.212029E-7	45.000004	11
ATTCCGT	25	3.890979E-5	45.000004	28
CCCGTAT	35	1.212029E-7	45.000004	42
TATTCCG	25	3.890979E-5	45.000004	27
GTCACGA	25	3.890979E-5	45.000004	23