SRR3550079_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550079_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	586735
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	4602	0.7843404603441076	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	4513	0.7691717726060316	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT	3573	0.6089631605409598	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	1989	0.3389946057419448	Illumina Single End Adapter 1 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	1487	0.2534363895114489	Illumina Single End Adapter 1 (95% over 21bp)
TGCAATGGGGTTTCTCTTGTTGAATTACAACGATGATTTTTCATGTCATTG	1236	0.210657281396201	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	945	0.1610607855335032	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG	935	0.15935643859664073	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG	840	0.14316514269644728	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCC	832	0.14180166514695733	No Hit
AAAACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC	800	0.13634775494899742	No Hit
ACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG	763	0.1300416712826063	No Hit
AGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG	756	0.12884862842680256	No Hit
GGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG	707	0.12049732843617646	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC	657	0.11197559375186414	No Hit
AGACATAGACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCC	638	0.10873733457182544	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAC	25	3.888462E-5	45.000004	26
CTAGATG	30	2.163677E-6	45.000004	18
CGTGGTT	25	3.888462E-5	45.000004	44
GTTTGAA	30	2.163677E-6	45.000004	11
TTAGGCA	30	2.163677E-6	45.000004	13
AGGTACG	25	3.888462E-5	45.000004	1
GTACCTT	30	2.163677E-6	45.000004	20
GATACGT	30	2.163677E-6	45.000004	11
TCGTTGA	25	3.888462E-5	45.000004	24
ATCTCCG	25	3.888462E-5	45.000004	31
GGTACCG	25	3.888462E-5	45.000004	1
GATGTAC	25	3.888462E-5	45.000004	17
TCCGCAC	25	3.888462E-5	45.000004	34
TTAATCG	25	3.888462E-5	45.000004	20
ATAGGTG	30	2.163677E-6	45.000004	34
GTCGAGC	25	3.888462E-5	45.000004	13
TACTTAG	25	3.888462E-5	45.000004	9
CTCCGCA	25	3.888462E-5	45.000004	33
CTCCGAT	25	3.888462E-5	45.000004	35
CGAGTAC	30	2.163677E-6	45.000004	31