SRR3550076_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550076_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	796861
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGC	2991	0.3753477708157382	No Hit
GCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	2719	0.34121383779605224	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCG	2701	0.33895497458151425	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTC	2646	0.3320528925370924	No Hit
CTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGCT	2561	0.32138603846844055	No Hit
CCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	2103	0.2639105188985281	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1745	0.21898423940938258	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1100	0.13804164088843598	No Hit
TCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	972	0.12197861358505435	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCC	860	0.10792346469459542	No Hit
ACTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	797	0.10001744344371227	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	30	2.1646592E-6	45.000004	1
TGTCACG	30	2.1646592E-6	45.000004	1
ATTCGGC	30	2.1646592E-6	45.000004	17
CATATAG	20	7.0319837E-4	45.0	14
ATTAGCG	25	3.8897248E-5	45.0	1
CGTAAAC	20	7.0319837E-4	45.0	40
ATAACGG	50	2.1827873E-11	45.0	2
GCGTAAG	55	1.8189894E-12	45.0	1
AGTCGTA	20	7.0319837E-4	45.0	43
CGAAAGG	120	0.0	41.250004	2
TAACGCC	55	6.002665E-11	40.909092	12
CACGACG	45	1.9270374E-8	40.0	26
CGTTATT	180	0.0	40.0	1
TACGTAG	45	1.9270374E-8	40.0	1
TAGTAAG	90	0.0	40.0	1
CGACGGT	40	3.4564437E-7	39.375	28
GTTACGG	40	3.4564437E-7	39.375	2
GCCGATT	40	3.4564437E-7	39.375	9
CGGTCTA	40	3.4564437E-7	39.375	31
TGCGTAG	70	0.0	38.57143	1