Basic Statistics
Measure | Value |
---|---|
Filename | SRR3550076_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 796861 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGC | 2991 | 0.3753477708157382 | No Hit |
GCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC | 2719 | 0.34121383779605224 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCG | 2701 | 0.33895497458151425 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTC | 2646 | 0.3320528925370924 | No Hit |
CTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGCT | 2561 | 0.32138603846844055 | No Hit |
CCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC | 2103 | 0.2639105188985281 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1745 | 0.21898423940938258 | No Hit |
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA | 1100 | 0.13804164088843598 | No Hit |
TCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC | 972 | 0.12197861358505435 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCC | 860 | 0.10792346469459542 | No Hit |
ACTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC | 797 | 0.10001744344371227 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTAACG | 30 | 2.1646592E-6 | 45.000004 | 1 |
TGTCACG | 30 | 2.1646592E-6 | 45.000004 | 1 |
ATTCGGC | 30 | 2.1646592E-6 | 45.000004 | 17 |
CATATAG | 20 | 7.0319837E-4 | 45.0 | 14 |
ATTAGCG | 25 | 3.8897248E-5 | 45.0 | 1 |
CGTAAAC | 20 | 7.0319837E-4 | 45.0 | 40 |
ATAACGG | 50 | 2.1827873E-11 | 45.0 | 2 |
GCGTAAG | 55 | 1.8189894E-12 | 45.0 | 1 |
AGTCGTA | 20 | 7.0319837E-4 | 45.0 | 43 |
CGAAAGG | 120 | 0.0 | 41.250004 | 2 |
TAACGCC | 55 | 6.002665E-11 | 40.909092 | 12 |
CACGACG | 45 | 1.9270374E-8 | 40.0 | 26 |
CGTTATT | 180 | 0.0 | 40.0 | 1 |
TACGTAG | 45 | 1.9270374E-8 | 40.0 | 1 |
TAGTAAG | 90 | 0.0 | 40.0 | 1 |
CGACGGT | 40 | 3.4564437E-7 | 39.375 | 28 |
GTTACGG | 40 | 3.4564437E-7 | 39.375 | 2 |
GCCGATT | 40 | 3.4564437E-7 | 39.375 | 9 |
CGGTCTA | 40 | 3.4564437E-7 | 39.375 | 31 |
TGCGTAG | 70 | 0.0 | 38.57143 | 1 |