##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550074_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 537401 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.97221627797492 33.0 31.0 34.0 30.0 34.0 2 32.073846159571715 33.0 31.0 34.0 30.0 34.0 3 32.06162809522126 33.0 31.0 34.0 30.0 34.0 4 35.742894040018534 37.0 35.0 37.0 35.0 37.0 5 31.40367062956712 37.0 35.0 37.0 0.0 37.0 6 33.189411631165555 37.0 35.0 37.0 17.0 37.0 7 35.1434794501685 37.0 35.0 37.0 32.0 37.0 8 35.287414798260514 37.0 35.0 37.0 33.0 37.0 9 37.36187502442311 39.0 37.0 39.0 34.0 39.0 10 37.07427228456962 39.0 37.0 39.0 33.0 39.0 11 37.108864702521956 39.0 37.0 39.0 34.0 39.0 12 37.09042781833305 39.0 37.0 39.0 34.0 39.0 13 36.988665819378824 39.0 37.0 39.0 33.0 39.0 14 38.07429647507169 40.0 37.0 41.0 33.0 41.0 15 38.21037921403198 40.0 37.0 41.0 33.0 41.0 16 38.17142692328447 40.0 37.0 41.0 33.0 41.0 17 38.095961860882284 40.0 37.0 41.0 33.0 41.0 18 38.0905059722628 40.0 37.0 41.0 33.0 41.0 19 38.02397836996954 40.0 37.0 41.0 34.0 41.0 20 37.98529403555259 40.0 37.0 41.0 33.0 41.0 21 37.88551379695981 40.0 36.0 41.0 33.0 41.0 22 37.92563281422997 40.0 37.0 41.0 33.0 41.0 23 37.6868800020841 40.0 36.0 41.0 33.0 41.0 24 37.49458225794146 39.0 36.0 41.0 32.0 41.0 25 37.32124242418604 39.0 35.0 41.0 32.0 41.0 26 37.54966589195033 39.0 36.0 41.0 33.0 41.0 27 37.639909490306124 40.0 36.0 41.0 33.0 41.0 28 37.58411130608242 40.0 36.0 41.0 33.0 41.0 29 37.57119171717209 40.0 36.0 41.0 33.0 41.0 30 37.40299515631716 40.0 36.0 41.0 33.0 41.0 31 37.442088868461354 40.0 36.0 41.0 33.0 41.0 32 37.32923273309875 40.0 36.0 41.0 33.0 41.0 33 37.23154404253062 40.0 36.0 41.0 32.0 41.0 34 37.11813338642838 40.0 35.0 41.0 32.0 41.0 35 37.02329731429603 39.0 35.0 41.0 32.0 41.0 36 36.90722942458239 39.0 35.0 41.0 31.0 41.0 37 36.832488216434285 39.0 35.0 41.0 31.0 41.0 38 36.67315096175854 39.0 35.0 41.0 31.0 41.0 39 36.654446121239076 39.0 35.0 41.0 31.0 41.0 40 36.48617326726225 39.0 35.0 41.0 30.0 41.0 41 36.36816455495989 39.0 35.0 40.0 30.0 41.0 42 36.38375998556013 39.0 35.0 40.0 30.0 41.0 43 36.34606187930428 39.0 35.0 40.0 30.0 41.0 44 36.31199048755027 39.0 35.0 40.0 30.0 41.0 45 36.30090565518114 39.0 35.0 40.0 30.0 41.0 46 36.25227716360781 38.0 35.0 40.0 31.0 41.0 47 36.13869531318326 38.0 35.0 40.0 30.0 41.0 48 36.08549481671973 38.0 35.0 40.0 30.0 41.0 49 36.04012273888586 38.0 35.0 40.0 30.0 41.0 50 35.910152753716496 38.0 35.0 40.0 30.0 41.0 51 34.80782506917553 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 14.0 10 15.0 11 21.0 12 15.0 13 16.0 14 17.0 15 34.0 16 46.0 17 79.0 18 162.0 19 400.0 20 703.0 21 1178.0 22 1719.0 23 2365.0 24 2861.0 25 3466.0 26 4205.0 27 4759.0 28 5559.0 29 6436.0 30 8194.0 31 10995.0 32 14905.0 33 21425.0 34 33841.0 35 43991.0 36 50594.0 37 76553.0 38 112195.0 39 130578.0 40 55.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.88361019052812 18.30588331618289 22.555968448142078 11.25453804514692 2 31.509431504593405 29.028788558264683 22.77684634007008 16.684933597071833 3 30.841773647611376 28.959008263847668 24.68287182197279 15.516346266568167 4 27.120344026155514 23.917149391236713 30.972588439545145 17.98991814306263 5 25.661842832447277 35.858325533447086 20.50256698443062 17.97726464967501 6 24.87714016162977 37.87599948641704 22.91863989832546 14.328220453627738 7 75.71738794680323 5.196305924253956 14.165399766654696 4.9209063622881235 8 75.04284510077206 9.569762616742434 9.523614582034645 5.863777700450874 9 69.15729594846307 6.940068961538963 11.457552181704166 12.445082908293807 10 38.97778381506547 25.122394636407453 18.629663882277853 17.270157666249226 11 31.141735873211996 23.499584109445273 24.767910740768997 20.59076927657373 12 26.810519518943956 19.486379816933724 30.11643074724461 23.586669916877714 13 26.19608076650397 21.43538996019732 32.535294872916126 19.833234400382583 14 20.131894060487422 30.20984330137086 27.18249500838294 22.475767629758785 15 18.441722289314683 25.002186449225068 34.839719315743736 21.716371945716514 16 20.156642804907325 23.346253542512947 30.8683831998824 25.628720452697333 17 19.93483450905376 24.564152281071305 29.344939812170058 26.156073397704883 18 20.909711742255784 24.25656074328109 28.69049369093098 26.143233823532146 19 22.775357693789182 26.449336715041465 26.307357076000976 24.467948515168374 20 26.378812097484 24.36392935629074 27.876576336850878 21.380682209374378 21 24.001071825322246 27.13988250859228 27.41621247448367 21.4428331916018 22 20.803087452386578 22.86877024791543 28.412861159543805 27.915281140154185 23 21.794898037033796 27.65923397984001 27.050191570168273 23.495676412957923 24 23.357790551189893 24.48004376620066 26.875833874518285 25.286331808091166 25 22.546850489671584 27.49064478852849 25.287634373586947 24.674870348212973 26 20.586675499301265 26.33564135533801 27.706312418473356 25.37137072688737 27 23.93519922739258 26.041633714860968 26.059869631801952 23.9632974259445 28 21.754890668234708 25.770327930167603 28.808654989477134 23.66612641212056 29 21.686412939313474 25.504232407457373 28.157186160799853 24.6521684924293 30 23.01074988695592 27.547585508772777 27.146767497641427 22.294897106629872 31 26.384208440252248 25.67133295248799 23.168174231160716 24.77628437609904 32 24.65198241164419 27.86727229759528 23.83341303793629 23.647332252824242 33 24.535868001734272 26.833407455512738 22.999771120634314 25.63095342211868 34 25.626673564061104 25.003489014720852 25.78372574669567 23.586111674522378 35 22.8868200840713 26.454733057809715 24.527122204834008 26.131324653284977 36 25.525817778530367 27.397046153617133 24.76995762940523 22.307178438447266 37 23.493629524321687 27.94393758106144 25.748556478309492 22.813876416307377 38 24.375094203397463 27.66779369595516 23.111233510916428 24.845878589730948 39 26.191056585305944 23.0876012512072 24.473344857936624 26.24799730555023 40 23.29210403404534 25.63262814918469 29.16016159255379 21.91510622421618 41 24.000885744537133 25.78093453491899 26.81479937700153 23.403380343542345 42 22.912685313201877 27.552609689970804 27.00832339351806 22.52638160330926 43 25.278702495901573 24.045359052178913 26.401886114837897 24.27405233708162 44 24.215436889771325 24.224368767456703 27.209104560653962 24.35108978211801 45 23.076250323315364 22.62239928842708 26.34047945575092 27.960870932506637 46 25.689941030999197 25.00776887277843 25.429986174197666 23.872303922024706 47 21.48842298395425 25.160169035785195 29.892947724325037 23.458460255935513 48 22.779451471061645 24.814058775476784 26.50143933487284 25.905050418588726 49 22.64733411363209 23.59374098671197 29.283719233868194 24.475205665787744 50 22.116259552922305 22.609559714254345 29.33619401526979 25.937986717553557 51 21.515776859365726 23.0412671357143 27.011114605294743 28.431841399625235 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 507.0 1 762.0 2 1017.0 3 2009.0 4 3001.0 5 2055.5 6 1110.0 7 1072.5 8 1035.0 9 1064.0 10 1093.0 11 1147.0 12 1201.0 13 1148.0 14 1095.0 15 1117.0 16 1139.0 17 1119.5 18 1100.0 19 1034.0 20 968.0 21 1070.5 22 1173.0 23 1413.0 24 1653.0 25 1869.5 26 2752.5 27 3419.0 28 3942.0 29 4465.0 30 5606.5 31 6748.0 32 7131.0 33 7514.0 34 8823.0 35 10132.0 36 11240.5 37 12349.0 38 13245.5 39 14142.0 40 16277.5 41 18413.0 42 21280.0 43 24147.0 44 28869.5 45 33592.0 46 50299.5 47 67007.0 48 60997.0 49 54987.0 50 53672.5 51 52358.0 52 45337.5 53 38317.0 54 34297.5 55 30278.0 56 28599.0 57 26920.0 58 25504.5 59 24089.0 60 23400.0 61 22711.0 62 21497.0 63 20283.0 64 17279.0 65 14275.0 66 12163.0 67 10051.0 68 8755.5 69 7460.0 70 6529.0 71 5598.0 72 4796.5 73 3995.0 74 3500.0 75 2150.5 76 1296.0 77 1099.5 78 903.0 79 676.5 80 450.0 81 337.0 82 224.0 83 136.0 84 48.0 85 42.5 86 37.0 87 22.0 88 7.0 89 4.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 537401.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.4339828853248 #Duplication Level Percentage of deduplicated Percentage of total 1 73.24628596540835 24.48915071381069 2 9.717305635492469 6.49776460617051 3 3.7116911502830705 3.722898551825272 4 2.0956225281293346 2.8026003095830903 5 1.3370342050381845 2.2351189364170256 6 0.9688391346644836 1.943529062820314 7 0.8190267467439701 1.9168328363282805 8 0.6699052023499902 1.79180792561277 9 0.5554411925609729 1.6713550193299171 >10 6.7432254031328185 41.611695786553895 >50 0.07830942006317258 1.7718355558701344 >100 0.04653168438536328 2.902972035589342 >500 0.003972216959726133 0.8949296838033413 >1k 0.005107136091076457 2.5125193560753973 >5k 0.0017023786970254858 3.234989620210043 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGC 6006 1.1176011953829637 No Hit GAATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTC 5855 1.0895029968310443 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCG 5190 0.965759274731532 No Hit GCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC 2463 0.4583169737309756 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1537 0.2860061667172186 No Hit GAATGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTT 1496 0.2783768545276246 No Hit CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT 1485 0.2763299658913921 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGCAGAGT 1410 0.26237390700798846 No Hit GAACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCT 1311 0.24395190928189564 No Hit GAATGACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCT 1293 0.24060245514987877 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTC 1147 0.21343466052351967 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTA 1101 0.20487494440836543 No Hit CCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC 999 0.1858947043269365 No Hit GAATATGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTC 690 0.1283957417273135 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGC 688 0.12802358015708942 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCG 645 0.12002210639727132 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 586 0.10904334007566045 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 560 0.10420523966274718 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCC 549 0.10215835102651465 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2979153369643897 0.0 2 0.0 0.0 0.0 1.1466297978604432 0.0 3 0.0 0.0 0.0 1.5686610184945693 0.0 4 0.0 0.0 0.0 2.2912127070846537 0.0 5 0.0 0.0 0.0 4.501108111075342 0.0 6 0.0 0.0 0.0 5.6730448957110235 0.0 7 0.0 0.0 0.0 6.676950731390526 0.0 8 0.0 0.0 0.0 8.145872449065036 0.0 9 0.0 0.0 0.0 8.607352796142917 0.0 10 0.0 0.0 0.0 10.67954841915069 0.0 11 0.0 0.0 0.0 11.994581327537537 0.0 12 0.0 0.0 0.0 14.349619743915623 0.0 13 0.0 0.0 0.0 14.882182950906307 0.0 14 0.0 0.0 0.0 15.141021322997165 0.0 15 0.0 0.0 0.0 15.713777979572052 0.0 16 0.0 0.0 0.0 16.40134648056107 0.0 17 0.0 0.0 0.0 17.22512611625211 0.0 18 0.0 0.0 0.0 18.14417911392052 0.0 19 0.0 0.0 0.0 19.024899469855843 0.0 20 0.0 0.0 0.0 19.58500263304311 0.0 21 0.0 0.0 0.0 20.176553448914312 0.0 22 0.0 0.0 0.0 20.879938816637853 0.0 23 0.0 0.0 0.0 21.531965887670474 0.0 24 0.0 0.0 0.0 22.054108570694883 0.0 25 0.0 0.0 0.0 22.482838699593042 0.0 26 0.0 0.0 0.0 23.007958675179243 0.0 27 0.0 0.0 0.0 23.476137930521155 0.0 28 0.0 0.0 0.0 23.92980288462433 0.0 29 0.0 0.0 0.0 24.419195349469017 0.0 30 0.0 0.0 0.0 24.942454517204098 0.0 31 0.0 0.0 0.0 25.45138546448555 0.0 32 0.0 0.0 0.0 25.92905483986818 0.0 33 0.0 0.0 0.0 26.445429018554115 0.0 34 0.0 0.0 0.0 26.90821193112778 0.0 35 0.0 0.0 0.0 27.40151209245982 0.0 36 0.0 0.0 0.0 27.854990965777883 0.0 37 0.0 0.0 0.0 28.322053736409124 0.0 38 0.0 0.0 0.0 28.755063723364863 0.0 39 0.0 0.0 0.0 29.21468326259162 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATTA 35 1.2103192E-7 45.000004 41 CGGTCTA 45 3.8380676E-10 45.000004 31 TGAGACG 30 2.1633368E-6 45.000004 1 GGTGTCG 25 3.888024E-5 45.0 9 CGTATAC 20 7.0299313E-4 45.0 39 GGCCGAT 50 2.1827873E-11 45.0 8 CACGCTA 20 7.0299313E-4 45.0 25 GCACGAT 20 7.0299313E-4 45.0 17 TAGCACG 20 7.0299313E-4 45.0 2 GCCGATT 20 7.0299313E-4 45.0 9 TCGCTAG 20 7.0299313E-4 45.0 1 GCGATAT 25 3.888024E-5 45.0 9 TCGTAAG 20 7.0299313E-4 45.0 1 CGTAAGG 75 0.0 45.0 2 ATTATGA 20 7.0299313E-4 45.0 40 CGTCCAG 20 7.0299313E-4 45.0 14 TGACTAG 25 3.888024E-5 45.0 1 CGAGACA 80 0.0 42.1875 22 TCAAGCG 80 0.0 42.1875 17 GGTACCC 60 3.6379788E-12 41.250004 8 >>END_MODULE