SRR3550073_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550073_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	695055
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGC	8378	1.2053722367294675	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTC	7078	1.0183366783923575	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCG	6576	0.9461121781729503	No Hit
GCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	3983	0.5730481760436225	No Hit
CTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGCT	2574	0.3703304055074778	No Hit
CCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	1860	0.26760472192848045	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCT	1848	0.26587823985152254	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACGTACTT	1788	0.25724582946673286	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1783	0.25652646193466705	No Hit
GAACTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCT	1699	0.2444410873959615	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACGTACTTCGTA	1670	0.2402687557099798	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTC	1608	0.23134859831236376	No Hit
TCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	1027	0.1477580910863169	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGC	1000	0.14387350641316154	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCG	780	0.11222133500226601	No Hit
ACTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	769	0.11063872643172123	No Hit
GAATATGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTC	728	0.10473991266878162	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCC	696	0.10013596046356045	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGG	35	1.2109922E-7	45.000004	2
CGACAGG	70	0.0	45.000004	2
GCGTAAG	75	0.0	45.000004	1
TTATCGT	20	7.03136E-4	45.0	27
TGCGACA	20	7.03136E-4	45.0	39
AACTACG	20	7.03136E-4	45.0	1
TGTAACG	20	7.03136E-4	45.0	1
TATCCGG	20	7.03136E-4	45.0	2
GTCGAAG	50	2.1827873E-11	44.999996	1
CGTAAGG	95	0.0	42.63158	2
TAATACG	275	0.0	41.727272	4
TAAGGGT	160	0.0	40.78125	4
CATACGA	50	1.0804797E-9	40.499996	18
AACGGGC	90	0.0	40.0	4
CTACGAA	40	3.4555887E-7	39.375	11
TTGCGAG	40	3.4555887E-7	39.375	1
GCTACGA	40	3.4555887E-7	39.375	10
TACGGCT	1235	0.0	39.352226	7
CGTTCGG	70	0.0	38.57143	45
TATCGCG	35	6.2447252E-6	38.57143	1