##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550073_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 695055 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.88320492622886 33.0 31.0 34.0 30.0 34.0 2 31.9600089201574 33.0 31.0 34.0 30.0 34.0 3 31.94608771967686 33.0 31.0 34.0 30.0 34.0 4 35.67562135370582 37.0 35.0 37.0 33.0 37.0 5 31.361590089992877 37.0 35.0 37.0 0.0 37.0 6 33.11496068656437 37.0 35.0 37.0 17.0 37.0 7 35.13681075598334 37.0 35.0 37.0 32.0 37.0 8 35.27993612016315 37.0 35.0 37.0 33.0 37.0 9 37.35901763169821 39.0 37.0 39.0 34.0 39.0 10 36.93723518282726 39.0 37.0 39.0 33.0 39.0 11 36.985791052506634 39.0 37.0 39.0 33.0 39.0 12 37.01101783312112 39.0 37.0 39.0 33.0 39.0 13 36.88358187481566 39.0 37.0 39.0 33.0 39.0 14 37.89323722583105 40.0 37.0 41.0 33.0 41.0 15 38.04048744343973 40.0 37.0 41.0 33.0 41.0 16 38.02286006143399 40.0 37.0 41.0 33.0 41.0 17 37.96003193991842 40.0 37.0 41.0 33.0 41.0 18 37.96979807353375 40.0 37.0 41.0 33.0 41.0 19 37.92835531001144 40.0 37.0 41.0 33.0 41.0 20 37.8897094474538 40.0 37.0 41.0 33.0 41.0 21 37.83915085856515 40.0 36.0 41.0 33.0 41.0 22 37.84424829689737 40.0 36.0 41.0 33.0 41.0 23 37.5561099481336 39.0 36.0 41.0 33.0 41.0 24 37.3002064584817 39.0 35.0 41.0 32.0 41.0 25 37.17780751163577 39.0 35.0 41.0 32.0 41.0 26 37.44139960147039 39.0 36.0 41.0 33.0 41.0 27 37.52896964988382 39.0 36.0 41.0 33.0 41.0 28 37.5051441972218 39.0 36.0 41.0 33.0 41.0 29 37.54331096100309 39.0 36.0 41.0 33.0 41.0 30 37.34083058175252 39.0 36.0 41.0 32.0 41.0 31 37.407800821517725 39.0 36.0 41.0 33.0 41.0 32 37.233066447978935 39.0 36.0 41.0 32.0 41.0 33 37.13798188632554 39.0 35.0 41.0 32.0 41.0 34 37.103878110365365 39.0 35.0 41.0 32.0 41.0 35 37.02665976073836 39.0 35.0 41.0 32.0 41.0 36 36.93218234528203 39.0 35.0 41.0 31.0 41.0 37 36.912204070181495 39.0 35.0 41.0 31.0 41.0 38 36.832843444043995 39.0 35.0 41.0 31.0 41.0 39 36.762237520771734 39.0 35.0 41.0 31.0 41.0 40 36.65560135528843 39.0 35.0 41.0 31.0 41.0 41 36.551455640201134 39.0 35.0 41.0 30.0 41.0 42 36.69138125759832 39.0 35.0 41.0 31.0 41.0 43 36.612409089928136 39.0 35.0 41.0 31.0 41.0 44 36.59343217443224 39.0 35.0 41.0 31.0 41.0 45 36.55574019322212 39.0 35.0 40.0 31.0 41.0 46 36.462462682809274 39.0 35.0 40.0 31.0 41.0 47 36.37392868190287 39.0 35.0 40.0 31.0 41.0 48 36.34573666832121 39.0 35.0 40.0 31.0 41.0 49 36.36181165519275 39.0 35.0 40.0 31.0 41.0 50 36.22751149189632 39.0 35.0 40.0 30.0 41.0 51 35.24888677874413 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 12.0 10 15.0 11 23.0 12 11.0 13 17.0 14 14.0 15 22.0 16 56.0 17 94.0 18 201.0 19 351.0 20 669.0 21 1370.0 22 2150.0 23 2936.0 24 3576.0 25 4498.0 26 5325.0 27 6106.0 28 6833.0 29 8134.0 30 10681.0 31 14445.0 32 19601.0 33 28181.0 34 43909.0 35 56159.0 36 66352.0 37 100925.0 38 150212.0 39 162121.0 40 54.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.59415441943444 18.92512103358727 23.1689578522563 11.311766694722 2 30.632108250426228 28.265532943436135 24.1998115257066 16.902547280431047 3 29.826560488018934 28.82289890728072 26.03923430519887 15.311306299501478 4 27.186625518843833 23.773226579191576 31.12976670910935 17.91038119285524 5 25.011258101876834 36.351799497881466 21.4713943500874 17.165548050154307 6 24.300379106689398 37.20899784909108 24.161685046507113 14.328937997712412 7 74.9257253023142 5.596823272978398 14.374545899245383 5.102905525462014 8 73.9614850623332 9.02130047262447 10.423203919114314 6.59401054592802 9 68.3484040831301 6.843487206048442 12.350821158037853 12.457287552783592 10 37.668817575587546 23.62546848810526 21.05761414564315 17.648099790664048 11 29.932163641726195 23.511664544532447 26.06829675349433 20.487875060247028 12 24.75372452539727 20.48744343972779 31.463840991000712 23.294991043874226 13 24.744228873974002 21.984447273956736 34.440152218169786 18.831171633899476 14 20.79950507513794 29.042018257547962 28.645646747379704 21.512829919934394 15 18.44544676320579 23.75567401140917 36.68587377977283 21.113005445612217 16 19.885332815388708 24.320665271093656 30.129989713044292 25.664012200473348 17 20.244441087395963 24.664810698433936 30.433850558588887 24.656897655581215 18 20.32716835358353 24.450726920891153 30.814252109545286 24.40785261598003 19 20.952298738948716 26.38381135305839 28.340059419758152 24.323830488234744 20 23.371387875779615 25.525605887303882 30.397018940947117 20.705987295969383 21 21.80028918574789 28.61370682895598 28.705066505528336 20.880937479767788 22 19.512412686765796 24.17204393896886 29.51651308169857 26.799030292566776 23 20.4831272345354 27.19194883858112 28.387393803368077 23.937530123515405 24 21.79223226938875 25.163332398155543 27.886570127543862 25.15786520491184 25 19.514139168842753 29.491047471063442 26.00758213378797 24.98723122630583 26 18.85404752141917 25.87651336944558 29.320557365963847 25.948881743171405 27 22.337512858694637 26.744214486623363 26.848810525785726 24.069462128896273 28 18.26805072979836 26.253749703260894 29.163591370467085 26.31460819647366 29 21.38032242052787 23.471379962736762 27.314816813057956 27.833480803677407 30 20.993446561782882 28.232873657480344 27.450345656099156 23.32333412463762 31 21.80057693276072 25.941831941357158 23.440447158857932 28.817143967024194 32 24.16657674572516 27.216695081684183 23.5997151304573 25.017013042133357 33 20.91158253663379 25.53366280366302 26.78924689413068 26.76550776557251 34 21.026537468257906 25.545316557682483 25.628043823870055 27.800102150189552 35 20.629590464063995 24.567408334592226 25.92111415643366 28.881887044910115 36 19.037486242095948 25.603297580766988 28.8270712389667 26.53214493817036 37 20.461114588054183 27.427182021566637 27.825567760824683 24.286135629554494 38 20.375653725244767 24.328578313946377 27.16058441418305 28.135183546625807 39 23.55770406658466 24.280668436310794 29.199272000057547 22.962355497046996 40 19.970793678198127 23.645754652509513 31.379243369229776 25.004208300062587 41 18.335959024825375 26.699182079116042 27.69334800843099 27.2715108876276 42 20.574055290588515 23.212983145218725 29.504571580666276 26.70838998352648 43 21.90977692412831 22.882649574494103 29.135248289703693 26.072325211673895 44 21.579731100416513 23.688053463394983 28.469113955010755 26.26310148117775 45 21.02941493838617 22.02415636172677 28.062383552380748 28.88404514750631 46 24.679198049075254 23.884872420168186 27.617238923538423 23.818690607218134 47 18.38458826999302 23.679564926516605 33.011200552474264 24.924646251016107 48 19.987195257929226 24.01737991957471 28.370560603117738 27.62486421937832 49 20.938918502852292 20.94381020207034 32.74719266820612 25.370078626871255 50 20.82698491486285 20.459819726496463 31.270762745394247 27.44243261324643 51 19.783614246354606 21.444777751400967 27.80211637927934 30.96949162296509 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 324.0 1 605.5 2 887.0 3 2162.0 4 3437.0 5 2382.5 6 1328.0 7 1300.5 8 1273.0 9 1323.5 10 1374.0 11 1380.0 12 1386.0 13 1427.5 14 1469.0 15 1470.0 16 1471.0 17 1503.5 18 1536.0 19 1578.5 20 1621.0 21 1795.5 22 1970.0 23 2155.5 24 2341.0 25 2623.5 26 3737.0 27 4568.0 28 5402.5 29 6237.0 30 7336.0 31 8435.0 32 9403.0 33 10371.0 34 11750.0 35 13129.0 36 15006.0 37 16883.0 38 18983.5 39 21084.0 40 23938.0 41 26792.0 42 30012.0 43 33232.0 44 40398.5 45 47565.0 46 70034.0 47 92503.0 48 87457.0 49 82411.0 50 79697.5 51 76984.0 52 65797.5 53 54611.0 54 47076.5 55 39542.0 56 36054.5 57 32567.0 58 29446.0 59 26325.0 60 24289.5 61 22254.0 62 20083.5 63 17913.0 64 15246.5 65 12580.0 66 10297.0 67 8014.0 68 6929.5 69 5845.0 70 5079.0 71 4313.0 72 3724.5 73 3136.0 74 2524.5 75 1543.0 76 1173.0 77 925.0 78 677.0 79 540.0 80 403.0 81 265.5 82 128.0 83 99.0 84 70.0 85 59.0 86 48.0 87 32.5 88 17.0 89 11.5 90 6.0 91 4.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 695055.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.91651111300181 #Duplication Level Percentage of deduplicated Percentage of total 1 72.22022911474649 24.494582033538357 2 11.013763275237876 7.470968490411532 3 4.296549878680651 4.371719451235165 4 2.202961769195786 2.9886710930578797 5 1.4011152440633508 2.376047037293544 6 0.9969017218628118 2.0286856996878417 7 0.7490749081645354 1.7784205213063293 8 0.6114507700220104 1.6590621469204023 9 0.5143311538259815 1.5699886465051751 >10 5.855114310511914 39.37402343281543 >50 0.08050768997344286 1.8116985840621653 >100 0.04934342286219926 3.1782897924960056 >500 0.003029859298556095 0.7508984890816198 >1k 0.0043283704265087075 2.9125759576499197 >5k 0.001298511127952612 3.2343686239386606 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGC 8378 1.2053722367294675 No Hit GAATCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTC 7078 1.0183366783923575 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCG 6576 0.9461121781729503 No Hit GCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC 3983 0.5730481760436225 No Hit CTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGCT 2574 0.3703304055074778 No Hit CCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC 1860 0.26760472192848045 No Hit GAATGACTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCT 1848 0.26587823985152254 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACGTACTT 1788 0.25724582946673286 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1783 0.25652646193466705 No Hit GAACTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCT 1699 0.2444410873959615 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACGTACTTCGTA 1670 0.2402687557099798 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTC 1608 0.23134859831236376 No Hit TCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC 1027 0.1477580910863169 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGC 1000 0.14387350641316154 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCG 780 0.11222133500226601 No Hit ACTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC 769 0.11063872643172123 No Hit GAATATGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTC 728 0.10473991266878162 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCC 696 0.10013596046356045 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.4387350641316155E-4 0.0 0.0 0.3933501665335837 0.0 2 1.4387350641316155E-4 0.0 0.0 1.557574580428887 0.0 3 2.877470128263231E-4 0.0 0.0 2.1324931120558803 0.0 4 2.877470128263231E-4 0.0 0.0 3.064505686600341 0.0 5 2.877470128263231E-4 0.0 0.0 5.650775837883333 0.0 6 2.877470128263231E-4 0.0 0.0 6.771406579335448 0.0 7 2.877470128263231E-4 0.0 0.0 8.183812791793455 0.0 8 2.877470128263231E-4 0.0 0.0 10.295012624900188 0.0 9 2.877470128263231E-4 0.0 0.0 10.994813360093806 0.0 10 2.877470128263231E-4 0.0 0.0 13.516484306997288 0.0 11 2.877470128263231E-4 0.0 0.0 15.354756098438253 0.0 12 2.877470128263231E-4 0.0 0.0 18.278697369272937 0.0 13 2.877470128263231E-4 0.0 0.0 18.96655660343426 0.0 14 2.877470128263231E-4 0.0 0.0 19.287538396242024 0.0 15 2.877470128263231E-4 0.0 0.0 20.01870355583371 0.0 16 2.877470128263231E-4 0.0 0.0 21.02121414852062 0.0 17 2.877470128263231E-4 0.0 0.0 22.17378480839646 0.0 18 2.877470128263231E-4 0.0 0.0 23.356425031112646 0.0 19 2.877470128263231E-4 0.0 0.0 24.451158541410393 0.0 20 2.877470128263231E-4 0.0 0.0 25.22649286747092 0.0 21 2.877470128263231E-4 0.0 0.0 26.060959204667256 0.0 22 2.877470128263231E-4 0.0 0.0 26.930242930415577 0.0 23 2.877470128263231E-4 0.0 0.0 27.74384760918201 0.0 24 2.877470128263231E-4 0.0 0.0 28.421779571400826 0.0 25 2.877470128263231E-4 0.0 0.0 28.982310752386503 0.0 26 2.877470128263231E-4 0.0 0.0 29.523994504032053 0.0 27 2.877470128263231E-4 0.0 0.0 30.077763630216314 0.0 28 2.877470128263231E-4 0.0 0.0 30.630237894842853 0.0 29 2.877470128263231E-4 0.0 0.0 31.216378559970074 0.0 30 2.877470128263231E-4 0.0 0.0 31.83460301702743 0.0 31 2.877470128263231E-4 0.0 0.0 32.42534763435987 0.0 32 2.877470128263231E-4 0.0 0.0 32.97897288703771 0.0 33 2.877470128263231E-4 0.0 0.0 33.496629763112274 0.0 34 2.877470128263231E-4 0.0 0.0 34.015725374250955 0.0 35 2.877470128263231E-4 0.0 0.0 34.53381387084475 0.0 36 2.877470128263231E-4 0.0 0.0 35.0470106682205 0.0 37 2.877470128263231E-4 0.0 0.0 35.568552128968214 0.0 38 2.877470128263231E-4 0.0 0.0 36.065922840638514 0.0 39 2.877470128263231E-4 0.0 0.0 36.56890461905893 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACGG 35 1.2109922E-7 45.000004 2 CGACAGG 70 0.0 45.000004 2 GCGTAAG 75 0.0 45.000004 1 TTATCGT 20 7.03136E-4 45.0 27 TGCGACA 20 7.03136E-4 45.0 39 AACTACG 20 7.03136E-4 45.0 1 TGTAACG 20 7.03136E-4 45.0 1 TATCCGG 20 7.03136E-4 45.0 2 GTCGAAG 50 2.1827873E-11 44.999996 1 CGTAAGG 95 0.0 42.63158 2 TAATACG 275 0.0 41.727272 4 TAAGGGT 160 0.0 40.78125 4 CATACGA 50 1.0804797E-9 40.499996 18 AACGGGC 90 0.0 40.0 4 CTACGAA 40 3.4555887E-7 39.375 11 TTGCGAG 40 3.4555887E-7 39.375 1 GCTACGA 40 3.4555887E-7 39.375 10 TACGGCT 1235 0.0 39.352226 7 CGTTCGG 70 0.0 38.57143 45 TATCGCG 35 6.2447252E-6 38.57143 1 >>END_MODULE