SRR3550069_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550069_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	673708
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGC	5542	0.8226115765287038	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTC	5007	0.7432003182387622	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCG	4820	0.7154434859019041	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	2791	0.41427443343406933	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	2353	0.3492611042172573	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2222	0.32981647835560807	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	2095	0.31096558152790227	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTTGTCTT	1503	0.22309368450426592	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT	1213	0.180048329543363	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT	1184	0.1757437940472727	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTA	1090	0.1617911617496007	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTC	969	0.14383085847281019	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCC	782	0.11607402613595208	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	758	0.11251165193229115	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTG	718	0.10657436159285626	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATGCG	25	3.8890816E-5	45.0	1
AGTTACG	25	3.8890816E-5	45.0	1
TATAGCG	20	7.0312055E-4	45.0	1
AGTACGG	90	0.0	42.5	2
TTAACGG	65	0.0	41.53846	2
TAATACG	170	0.0	41.02941	4
GACCTAT	50	1.0804797E-9	40.5	33
ACACGTG	145	0.0	40.344826	42
CGTAAGG	85	0.0	39.705883	2
ACTGCGT	40	3.4553887E-7	39.375	32
ACGGGTA	80	0.0	39.375	5
TTTACGG	35	6.2444396E-6	38.571426	2
ATAGCGG	70	0.0	38.571426	2
CTAACGG	35	6.2444396E-6	38.571426	2
GTCAAGC	165	0.0	38.181816	16
CAAGGGA	410	0.0	37.865852	4
AACGGGC	125	0.0	37.8	4
AATACGG	185	0.0	37.7027	5
AACACGT	150	0.0	37.5	41
CGACGAA	30	1.1394206E-4	37.499996	19