SRR3550065_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550065_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	613077
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGC	2952	0.48150558575839575	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCG	2744	0.4475783629136308	No Hit
GCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	2541	0.41446669831032645	No Hit
CTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGCT	2292	0.3738518978855837	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTC	2176	0.35493094668369557	No Hit
CCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	1734	0.28283559813856984	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1545	0.2520074966113555	No Hit
TCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	874	0.1425595806073299	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCC	770	0.1255959691849474	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGCTTCGT	729	0.11890839160496969	No Hit
ACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	709	0.1156461586391269	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCT	642	0.10471767820355354	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	25	3.8886676E-5	45.000004	1
ACGTTAG	25	3.8886676E-5	45.000004	1
CAACCGG	25	3.8886676E-5	45.000004	2
TAAGTCA	25	3.8886676E-5	45.000004	41
CGCTAGT	25	3.8886676E-5	45.000004	7
TCGTAAG	35	1.210683E-7	45.000004	1
TATTGCG	20	7.0307084E-4	45.0	1
GTTAACG	20	7.0307084E-4	45.0	1
GCGATAT	20	7.0307084E-4	45.0	9
ACATGCG	20	7.0307084E-4	45.0	1
ACTCACG	20	7.0307084E-4	45.0	1
TGCGTAC	20	7.0307084E-4	45.0	42
TAATACG	125	0.0	41.4	4
AACACGG	50	1.0804797E-9	40.500004	2
TCCCCGA	45	1.925764E-8	40.0	39
TTAACGG	35	6.2435192E-6	38.57143	2
CGCATGG	65	9.094947E-12	38.07692	2
CGGTAGT	65	9.094947E-12	38.07692	12
AAGTACG	30	1.13930066E-4	37.499996	1
GTTTACG	30	1.13930066E-4	37.499996	1