SRR3550057_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550057_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	559526
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGCT	2170	0.38782826892762806	No Hit
GCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	1874	0.33492634837344465	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1533	0.27398190611338885	No Hit
CCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	1267	0.2264416666964538	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCC	790	0.1411909366142056	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGC	699	0.12492717049788571	No Hit
TCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	681	0.1217101618155367	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTC	633	0.11313147199593943	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAG	25	3.8882295E-5	45.000004	1
CAACGAC	35	1.2104283E-7	45.0	12
CGACGCA	20	7.030179E-4	45.0	45
GCAACGA	35	1.2104283E-7	45.0	11
TATTGCG	35	1.2104283E-7	45.0	1
TCCAGCG	20	7.030179E-4	45.0	18
TCGTAAG	20	7.030179E-4	45.0	1
TTACCGG	35	1.2104283E-7	45.0	2
CGTGAAT	30	2.163497E-6	44.999996	27
TATTACG	30	2.163497E-6	44.999996	1
CGCAATC	30	2.163497E-6	44.999996	20
CGTTATT	100	0.0	42.750004	1
CGTTAGG	80	0.0	42.1875	2
AGTTACG	55	6.002665E-11	40.909092	1
TAACGGG	135	0.0	40.0	3
TTACGGG	250	0.0	39.6	3
CTAACGG	40	3.453988E-7	39.375	2
ATTGCGG	75	0.0	39.0	2
TGATATG	70	0.0	38.571426	1
AATCCGA	35	6.2425424E-6	38.571426	32