##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550049_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 651646 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.87914603941404 33.0 31.0 34.0 30.0 34.0 2 31.98177538111183 33.0 31.0 34.0 30.0 34.0 3 31.941099922350478 33.0 31.0 34.0 30.0 34.0 4 35.68090343530076 37.0 35.0 37.0 33.0 37.0 5 31.77858377094312 37.0 35.0 37.0 0.0 37.0 6 33.31766480573808 37.0 35.0 37.0 17.0 37.0 7 35.146278807818966 37.0 35.0 37.0 32.0 37.0 8 35.232359287097594 37.0 35.0 37.0 33.0 37.0 9 37.26764685120449 39.0 37.0 39.0 34.0 39.0 10 36.96997449535484 39.0 37.0 39.0 33.0 39.0 11 36.9844685611513 39.0 37.0 39.0 33.0 39.0 12 36.99100892202208 39.0 37.0 39.0 33.0 39.0 13 36.89164055330655 39.0 37.0 39.0 33.0 39.0 14 37.93453961199793 40.0 37.0 41.0 33.0 41.0 15 38.05367791715134 40.0 37.0 41.0 33.0 41.0 16 38.009185969069094 40.0 37.0 41.0 33.0 41.0 17 37.92974713264564 40.0 37.0 41.0 33.0 41.0 18 37.88004376609386 39.0 37.0 41.0 33.0 41.0 19 37.802148712644595 39.0 37.0 41.0 33.0 41.0 20 37.71928777280916 39.0 36.0 41.0 33.0 41.0 21 37.656328742906425 39.0 36.0 41.0 33.0 41.0 22 37.645335043873516 39.0 36.0 41.0 33.0 41.0 23 37.386488983282334 39.0 35.0 41.0 32.0 41.0 24 37.150142868981014 39.0 35.0 41.0 32.0 41.0 25 37.00267169598217 39.0 35.0 40.0 31.0 41.0 26 37.24918130395951 39.0 35.0 41.0 32.0 41.0 27 37.34959164945384 39.0 35.0 41.0 33.0 41.0 28 37.24354020434408 39.0 35.0 41.0 32.0 41.0 29 37.21830257532464 39.0 35.0 41.0 32.0 41.0 30 37.06110065894673 39.0 35.0 41.0 32.0 41.0 31 37.05980240805591 39.0 35.0 41.0 32.0 41.0 32 36.862360852364624 39.0 35.0 41.0 31.0 41.0 33 36.690744668117354 39.0 35.0 41.0 31.0 41.0 34 36.55778904497227 39.0 35.0 41.0 31.0 41.0 35 36.454194455271725 39.0 35.0 41.0 30.0 41.0 36 36.33069642106297 39.0 35.0 41.0 30.0 41.0 37 36.32664360711183 39.0 35.0 41.0 30.0 41.0 38 36.173207539062616 39.0 35.0 40.0 30.0 41.0 39 36.0596121206913 39.0 35.0 40.0 30.0 41.0 40 35.964141573799274 39.0 35.0 40.0 29.0 41.0 41 35.827475347044256 38.0 35.0 40.0 29.0 41.0 42 35.90653667788953 39.0 35.0 40.0 29.0 41.0 43 35.79572037578686 38.0 35.0 40.0 29.0 41.0 44 35.77027250992103 38.0 35.0 40.0 29.0 41.0 45 35.717285151754176 38.0 35.0 40.0 28.0 41.0 46 35.606840216927594 38.0 35.0 40.0 28.0 41.0 47 35.46859337738588 38.0 35.0 40.0 28.0 41.0 48 35.428442743452734 38.0 35.0 40.0 28.0 41.0 49 35.407498856741235 38.0 35.0 40.0 28.0 41.0 50 35.27898582972964 37.0 34.0 40.0 27.0 41.0 51 34.19339181089119 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 6.0 10 16.0 11 17.0 12 6.0 13 19.0 14 31.0 15 35.0 16 56.0 17 136.0 18 234.0 19 466.0 20 948.0 21 1498.0 22 2435.0 23 3254.0 24 4296.0 25 5543.0 26 6947.0 27 7953.0 28 8472.0 29 9694.0 30 11555.0 31 14915.0 32 19542.0 33 27997.0 34 43424.0 35 54935.0 36 64205.0 37 93383.0 38 133862.0 39 135701.0 40 59.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.86245292689589 19.603281536294244 23.731750060615735 14.80251547619413 2 32.76349428984449 29.202204878108667 21.813070286628015 16.221230545418834 3 28.228670167544955 28.700398682720373 27.23104262130052 15.839888528434152 4 25.969161170328675 22.948349257111992 33.1526626419866 17.929826930572734 5 25.76966635259021 34.35362144477216 22.858883504233894 17.017828698403733 6 24.750401291498758 35.46818364572176 25.522753151250832 14.258661911528653 7 72.53432078152862 5.554242640943088 16.74651574627942 5.164920831248868 8 71.86110250043735 9.191493540971631 12.708126805044456 6.239277153546557 9 65.76039751644298 6.568750517919239 14.788397381400332 12.882454584237454 10 39.48800422315183 21.678027640774285 21.411471872765276 17.422496263308606 11 29.583239979989134 21.92202514862364 27.531972880981392 20.962761990405834 12 24.186137872403116 18.51419328899433 33.06104848337901 24.238620355223542 13 24.164807272660312 19.81781519413915 36.47486518754047 19.542512345660068 14 19.7341808282411 26.483397427437595 31.734101030314005 22.0483207140073 15 17.932896081614867 22.503015440898892 38.08202613075197 21.48206234673427 16 20.084677877252375 23.34258170847362 31.147739723715024 25.425000690558985 17 20.278034392906576 24.23616503438984 30.68798089760391 24.79781967509967 18 21.52426317356356 22.919192322211753 31.021137243227155 24.535407260997534 19 21.65930581941729 24.682879968571893 28.708992305638336 24.94882190637248 20 23.22257790272633 23.90791933043401 30.626444419209204 22.243058347630463 21 22.022079472597085 27.1174840327417 29.555157247953645 21.305279246707567 22 20.166470752525147 22.49165958204301 30.264744968894153 27.07712469653769 23 21.263845707638808 25.674062297627852 29.057954779128547 24.004137215604793 24 22.65371075706749 22.782001270628534 28.83866393716834 25.72562403513564 25 21.467330421732044 27.50250903097694 26.502579621450913 24.527580925840102 26 20.220180895762425 23.89011825438965 29.628203042756347 26.261497807091583 27 23.679727950451625 23.79343999656255 26.836963627491002 25.689868425494822 28 20.244887561651574 24.5180665576095 29.64677140656123 25.590274474177697 29 23.118533682398112 24.25059004428785 26.377665174036206 26.253211099277827 30 22.284184971595007 25.933559018239965 26.4316822323777 25.35057377778733 31 22.957403252686273 24.5369418365186 23.71594393274876 28.78971097804636 32 25.01511556888249 26.783406941805826 23.020167391497836 25.181310097813842 33 22.318712920818975 25.489299404891614 23.874619041626897 28.31736863266252 34 21.72882209052154 25.32233758819973 26.88791153479036 26.06092878648837 35 21.271518585244138 24.61428444278028 25.149237469423586 28.964959502552002 36 19.970198543380917 29.74176163131516 24.52159608130795 25.766443743995975 37 21.762122379328655 25.075270929308246 27.42792866065318 25.734678030709922 38 21.30650690712442 26.300322567774526 24.4213882997824 27.971782225318652 39 24.344352608624927 25.274612289494602 27.122087759304897 23.25894734257557 40 21.446153279541345 24.422462502647143 29.440217541425866 24.691166676385645 41 19.25554672322089 26.254285302142577 27.57294604739383 26.917221927242707 42 20.922863026858142 24.28588528127235 28.372152978764543 26.419098713104965 43 22.64956740316061 24.409265153165983 26.957581263446716 25.983586180226688 44 22.86901170267292 22.72737038207861 27.17349603926058 27.230121875987884 45 21.96453289055714 21.323847610512455 27.377287668458028 29.334331830472372 46 25.10181908582267 23.9171267835604 26.12691553389417 24.85413859672276 47 19.842982232684616 23.003900890974545 31.958762886597935 25.194353989742897 48 21.05575726698238 23.001905942797162 28.335630081363195 27.606706708857264 49 21.439247689696554 21.265840655816195 31.446675035218508 25.848236619268743 50 21.20783370111993 21.07831552714204 30.738468432246957 26.975382339491073 51 20.94051064535039 21.241287447479156 27.772440865132296 30.045761042038162 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 293.0 1 580.0 2 867.0 3 4975.5 4 9084.0 5 5883.5 6 2683.0 7 2477.0 8 2271.0 9 2279.5 10 2288.0 11 2292.5 12 2297.0 13 2243.0 14 2189.0 15 2123.5 16 2058.0 17 1946.5 18 1835.0 19 1850.5 20 1866.0 21 1869.0 22 1872.0 23 2119.5 24 2367.0 25 2812.0 26 3701.0 27 4145.0 28 5044.5 29 5944.0 30 6424.5 31 6905.0 32 7898.0 33 8891.0 34 9241.5 35 9592.0 36 10681.0 37 11770.0 38 13287.5 39 14805.0 40 16953.0 41 19101.0 42 22686.0 43 26271.0 44 32383.5 45 38496.0 46 61596.0 47 84696.0 48 76374.5 49 68053.0 50 65654.0 51 63255.0 52 54728.0 53 46201.0 54 41216.0 55 36231.0 56 33793.0 57 31355.0 58 29746.5 59 28138.0 60 27500.0 61 26862.0 62 24568.5 63 22275.0 64 20409.0 65 18543.0 66 15953.5 67 13364.0 68 11666.0 69 9968.0 70 8801.5 71 7635.0 72 6490.5 73 5346.0 74 4608.0 75 2979.5 76 2089.0 77 1706.5 78 1324.0 79 1008.0 80 692.0 81 506.5 82 321.0 83 235.0 84 149.0 85 113.5 86 78.0 87 52.5 88 27.0 89 20.0 90 13.0 91 11.5 92 10.0 93 6.5 94 3.0 95 1.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 651646.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.3101737706338 #Duplication Level Percentage of deduplicated Percentage of total 1 73.51639537017981 29.634586723625667 2 9.14772728065364 7.374929525790313 3 3.821227805513775 4.621030705723138 4 2.3955183399571487 3.8625504221765152 5 1.8500899995032998 3.728872468564491 6 1.5367271938646636 3.7167444133645837 7 1.2511007596056203 3.5302462316992154 8 1.0731375542929118 3.46066890346722 9 0.9843093050676655 3.5709911218196457 >10 4.336518018842554 24.932992261988453 >50 0.04924685946354895 1.335989953137106 >100 0.029082790603615474 2.297302459277537 >500 0.003489934872433856 0.9856970339663975 >1k 0.003877705413815395 2.6089865515276154 >5k 0.0015510821655261582 4.338411223872084 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTC 8451 1.2968697728521315 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGC 7101 1.0897020775083404 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCG 6922 1.0622331756812748 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5281 0.810409332674489 No Hit GAACTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCT 2425 0.37213456385829113 No Hit GCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGC 2362 0.3624667380755809 No Hit GAATGACTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCT 1932 0.2964799906697808 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTC 1800 0.2762235937917213 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCGATCAT 1509 0.23156744612872635 No Hit GAATGCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTT 1493 0.22911212529502212 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCGATCATCGTA 1411 0.21652860602228816 No Hit CTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGCT 1362 0.20900918596906912 No Hit CCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGC 1321 0.20271742633270212 No Hit CGCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTG 1076 0.16512032606660673 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCC 965 0.14808653778278388 No Hit GAATATGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTC 800 0.12276604168520945 No Hit CGTTTCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTT 733 0.11248438569407317 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 665 0.10204927215083036 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGC 659 0.10112852683819129 No Hit CGTTCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTC 653 0.10020778152555222 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCG 652 0.10005432397344571 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.22266690810654866 0.0 2 0.0 0.0 0.0 0.9878062629096166 0.0 3 0.0 0.0 0.0 1.5640393710695684 0.0 4 0.0 0.0 0.0 2.536806793872747 0.0 5 0.0 0.0 0.0 5.141288368224465 0.0 6 0.0 0.0 0.0 6.7489096840922835 0.0 7 0.0 0.0 0.0 8.265684129113046 0.0 8 0.0 0.0 0.0 10.416238264333703 0.0 9 0.0 0.0 0.0 11.363838648591413 0.0 10 0.0 0.0 0.0 13.965711444557321 0.0 11 0.0 0.0 0.0 15.624587582828713 0.0 12 0.0 0.0 0.0 18.174131353526302 0.0 13 0.0 0.0 0.0 18.86760603149563 0.0 14 0.0 0.0 0.0 19.19968817425412 0.0 15 0.0 0.0 0.0 19.818582481899682 0.0 16 0.0 0.0 0.0 20.574207468472146 0.0 17 0.0 0.0 0.0 21.42313464672537 0.0 18 0.0 0.0 0.0 22.377794078379978 0.0 19 0.0 0.0 0.0 23.230097322779546 0.0 20 1.534575521065118E-4 0.0 0.0 23.866332333813144 0.0 21 1.534575521065118E-4 0.0 0.0 24.496429042762482 0.0 22 1.534575521065118E-4 0.0 0.0 25.178701319428033 0.0 23 1.534575521065118E-4 0.0 0.0 25.77979455102924 0.0 24 1.534575521065118E-4 0.0 0.0 26.274541699020634 0.0 25 1.534575521065118E-4 0.0 0.0 26.73921116679915 0.0 26 1.534575521065118E-4 0.0 0.0 27.189915997335977 0.0 27 1.534575521065118E-4 0.0 0.0 27.669163932564615 0.0 28 1.534575521065118E-4 0.0 0.0 28.113730461017177 0.0 29 1.534575521065118E-4 0.0 0.0 28.577939556139377 0.0 30 1.534575521065118E-4 0.0 0.0 29.111511464813717 0.0 31 1.534575521065118E-4 0.0 0.0 29.574492899519065 0.0 32 1.534575521065118E-4 0.0 0.0 30.038855452193367 0.0 33 1.534575521065118E-4 0.0 0.0 30.518103387422006 0.0 34 1.534575521065118E-4 0.0 0.0 30.961135340353504 0.0 35 1.534575521065118E-4 0.0 0.0 31.412454001098755 0.0 36 1.534575521065118E-4 0.0 0.0 31.836610675121154 0.0 37 1.534575521065118E-4 0.0 0.0 32.25693091034089 0.0 38 1.534575521065118E-4 0.0 0.0 32.684924023165955 0.0 39 1.534575521065118E-4 0.0 0.0 33.14360864641232 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTCACG 20 7.031034E-4 45.000004 1 ACGTCCA 20 7.031034E-4 45.000004 23 AGTTACG 20 7.031034E-4 45.000004 1 CAATGCG 20 7.031034E-4 45.000004 1 CGGTATG 20 7.031034E-4 45.000004 1 TACGTCC 20 7.031034E-4 45.000004 22 CGTTATT 335 0.0 42.313435 1 CGTTTTT 2300 0.0 41.086956 1 AACACGG 45 1.9261279E-8 40.0 2 GCGTTAG 40 3.4551522E-7 39.375004 1 CGGGATA 80 0.0 39.375004 6 TGCGTAG 40 3.4551522E-7 39.375004 1 ATAATAC 280 0.0 39.375 3 CGATGAA 535 0.0 39.11215 19 GATGAAT 560 0.0 38.973213 20 CAACGAC 35 6.244127E-6 38.571426 12 CGTAAGG 70 0.0 38.571426 2 CGATAGT 35 6.244127E-6 38.571426 10 TACGGGA 205 0.0 38.414635 4 TAATACG 235 0.0 38.29787 4 >>END_MODULE