SRR3550026_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550026_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	647693
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	1901	0.29350324922455545	No Hit
CTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGCT	1870	0.28871703106255586	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	1423	0.21970285304920698	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1390	0.21460784661869126	No Hit
TCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	681	0.10514240542973292	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATACGC	30	2.164028E-6	45.000004	32
CGTAAGG	50	2.1827873E-11	45.000004	2
CGGTCTA	60	0.0	45.000004	31
ATAACGC	50	2.1827873E-11	45.000004	11
ATGTCGT	20	7.0310035E-4	45.0	8
CACTATC	20	7.0310035E-4	45.0	36
ATCGGTT	20	7.0310035E-4	45.0	25
TGTCCGA	20	7.0310035E-4	45.0	22
TCGTTTA	55	6.002665E-11	40.909092	38
TAACGCC	55	6.002665E-11	40.909092	12
TTTTACG	50	1.0804797E-9	40.500004	1
TGATTCG	135	0.0	40.000004	15
GCTAACG	45	1.9261279E-8	40.0	1
ATCACGG	40	3.4550976E-7	39.375	2
GTACGAG	40	3.4550976E-7	39.375	1
ATGCGAA	75	0.0	39.000004	26
TTAGCGT	35	6.2440668E-6	38.571426	14
CAATACG	35	6.2440668E-6	38.571426	1
TCACGGG	130	0.0	38.07692	3
AAGGGTA	285	0.0	37.894737	5