##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550025_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1819686 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.818549464028408 31.0 31.0 34.0 30.0 34.0 2 31.946200608236804 33.0 31.0 34.0 30.0 34.0 3 31.8627735774194 33.0 31.0 34.0 30.0 34.0 4 35.64251854440821 37.0 35.0 37.0 33.0 37.0 5 31.48814575701522 37.0 35.0 37.0 0.0 37.0 6 33.15554991355651 37.0 35.0 37.0 17.0 37.0 7 35.09336555867331 37.0 35.0 37.0 32.0 37.0 8 35.20048623773552 37.0 35.0 37.0 32.0 37.0 9 37.285478373741405 39.0 37.0 39.0 34.0 39.0 10 37.05188037936215 39.0 37.0 39.0 33.0 39.0 11 37.0608896260124 39.0 37.0 39.0 33.0 39.0 12 36.99048901843505 39.0 37.0 39.0 33.0 39.0 13 36.840505449841345 39.0 37.0 39.0 33.0 39.0 14 37.810832198522164 40.0 37.0 41.0 33.0 41.0 15 37.90661960360194 40.0 37.0 41.0 33.0 41.0 16 37.9088875773073 40.0 37.0 41.0 33.0 41.0 17 37.81620510351786 40.0 36.0 41.0 33.0 41.0 18 37.69218645414649 39.0 36.0 41.0 33.0 41.0 19 37.55545682057234 39.0 36.0 41.0 33.0 41.0 20 37.36292525193907 39.0 35.0 41.0 32.0 41.0 21 37.33177372359847 39.0 35.0 41.0 33.0 41.0 22 37.374620676314485 39.0 35.0 41.0 33.0 41.0 23 37.124302214777714 39.0 35.0 40.0 32.0 41.0 24 36.864440898045046 39.0 35.0 40.0 32.0 41.0 25 36.74184502161362 38.0 35.0 40.0 31.0 41.0 26 36.998329382102185 39.0 35.0 40.0 32.0 41.0 27 37.10974970406982 39.0 35.0 40.0 33.0 41.0 28 36.98812652292758 39.0 35.0 40.0 32.0 41.0 29 36.97487863290699 39.0 35.0 41.0 32.0 41.0 30 36.737875655470226 39.0 35.0 40.0 31.0 41.0 31 36.514497556171776 39.0 35.0 40.0 31.0 41.0 32 36.19904203252649 38.0 35.0 40.0 30.0 41.0 33 35.98556674063547 39.0 35.0 40.0 30.0 41.0 34 35.68589800657916 38.0 35.0 40.0 27.0 41.0 35 35.51432554847375 38.0 35.0 40.0 26.0 41.0 36 35.329751396669536 38.0 35.0 40.0 25.0 41.0 37 35.22514543717982 38.0 35.0 40.0 25.0 41.0 38 35.02752123168503 38.0 34.0 40.0 24.0 41.0 39 34.995469548042905 38.0 34.0 40.0 24.0 41.0 40 34.892408910108664 38.0 34.0 40.0 23.0 41.0 41 34.72249882672065 38.0 34.0 40.0 23.0 41.0 42 34.72673966827244 38.0 34.0 40.0 23.0 41.0 43 34.69429396060639 38.0 34.0 40.0 23.0 41.0 44 34.67249789249354 38.0 34.0 40.0 23.0 41.0 45 34.601929124035685 38.0 34.0 40.0 23.0 41.0 46 34.54207923784653 37.0 34.0 40.0 23.0 41.0 47 34.37443657861851 37.0 34.0 40.0 23.0 41.0 48 34.33896947055701 37.0 34.0 40.0 23.0 41.0 49 34.31304686632749 37.0 34.0 40.0 23.0 41.0 50 34.16343259221646 37.0 34.0 40.0 22.0 41.0 51 33.14568557432436 35.0 32.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 9.0 9 28.0 10 41.0 11 31.0 12 41.0 13 39.0 14 64.0 15 95.0 16 204.0 17 376.0 18 847.0 19 1725.0 20 3279.0 21 5530.0 22 8147.0 23 11512.0 24 16009.0 25 22959.0 26 30415.0 27 34060.0 28 33910.0 29 34648.0 30 38822.0 31 47486.0 32 61434.0 33 84986.0 34 129437.0 35 150474.0 36 178011.0 37 252229.0 38 345242.0 39 327466.0 40 129.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.75221109576048 17.131691951248733 20.03895177519638 20.07714517779441 2 36.82503464883502 28.237619017786585 20.00927632569575 14.928070007682646 3 25.978932629036 28.720724344749588 31.147461704931512 14.152881321282903 4 23.424975517754163 20.85810409048594 38.9757903286611 16.7411300630988 5 23.73618305575797 32.42075830665291 27.210189010631503 16.632869626957618 6 22.693695505708128 32.41531780757779 30.7731114049347 14.117875281779385 7 66.45498179356218 4.790551776515288 23.33122307914662 5.423243350775904 8 64.79090348554641 8.994408925495938 19.480888460976235 6.733799127981421 9 58.996607106940424 5.860571549157382 20.976091479518992 14.166729864383196 10 36.52201533671194 19.405051201141298 27.10791861892656 16.965014843220207 11 28.87685018184456 19.135169474293917 32.10042831565446 19.887552028207065 12 23.30314131119325 16.56016477568108 36.88207745731956 23.25461645580611 13 23.160094653693 17.93721554158245 41.157375503246165 17.745314301478388 14 18.43862072907084 24.130921488652437 36.90499349887838 20.525464283398346 15 16.367274353926998 20.725553749383135 42.681099926031195 20.226071970658673 16 19.529523225435597 22.694354960141474 34.31185380334849 23.464268011074438 17 19.43752933198365 23.87076671469693 34.74148836667425 21.950215586645168 18 20.052910227368898 22.568893754197152 34.32817530057384 23.050020717860114 19 19.634156662193366 25.09652764268121 31.680905386973357 23.588410308152067 20 20.73335729351108 25.459722171847233 33.901233509517574 19.905687025124113 21 19.397357566085578 27.84529858448106 33.805337844001656 18.952006005431706 22 18.27842825630356 21.052917921003953 35.47144946985359 25.1972043528389 23 19.24496863744624 24.597045863956748 34.4771020934381 21.680883405158912 24 21.518108069194355 22.458600000219818 32.40152421901361 23.621767711572218 25 21.075833962562772 27.265967864785463 29.39534623006387 22.262851942587897 26 20.3116911379216 21.429081720692473 32.617715364079295 25.641511777306636 27 23.87950448593878 21.302851151242578 30.626108020834366 24.191536341984275 28 20.431437072110242 23.19026469401864 31.84280145036012 24.535496783511 29 26.11846219622506 21.56965542406767 28.80117778561796 23.51070459408931 30 26.890298655921956 23.17289906060716 29.656435231133283 20.2803670523376 31 24.93144421619994 24.93204871609717 27.68312774841374 22.45337931928915 32 26.088731792188323 27.429897246008377 26.292942848381536 20.188428113421768 33 23.929732931945402 23.913411434720054 26.41598605473692 25.740869578597625 34 23.52730086399522 24.74344474815985 30.54873203398828 21.180522353856652 35 23.522684682961785 27.43989897158081 27.76896673382111 21.268449611636292 36 25.8696830112448 27.92817002493837 26.1736915050179 20.028455458798934 37 23.30775749222668 27.521781230388097 29.75062730602972 19.419833971355498 38 21.990936897904366 27.51112005038232 26.6755912833313 23.822351768382017 39 24.28418968986957 24.371732265896423 29.005608659955616 22.338469384278387 40 22.84262229857239 23.1533902002873 31.685521568006784 22.31846593313352 41 22.448818092791832 24.652494990894034 29.887683919093732 23.0110029972204 42 22.56548657295819 24.969747527870194 31.65650557293951 20.80826032623211 43 25.568037562524527 21.26768024813072 29.658413594433323 23.50586859491143 44 23.729478602352273 21.303510605675925 29.752605669329764 25.214405122642034 45 21.637469321630213 20.41275252983207 29.85542560639583 28.094352542141888 46 25.79192234264593 22.211854133075708 28.617409816858512 23.37881370741985 47 20.510791422256368 21.652252091844417 34.89090975036353 22.946046735535692 48 21.018681245006007 22.84597452527524 30.900386110570725 25.234958119148025 49 21.680718541550576 20.25497805665373 34.3535642962577 23.71073910553799 50 20.912289263092642 19.75456205081536 33.773464213056535 25.55968447303546 51 20.697032345140865 19.29734031036124 31.39156975434223 28.61405759015566 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1180.0 1 1856.5 2 2533.0 3 31475.5 4 60418.0 5 38032.5 6 15647.0 7 14851.0 8 14055.0 9 13754.0 10 13453.0 11 13193.0 12 12933.0 13 12295.0 14 11657.0 15 10967.0 16 10277.0 17 9695.0 18 9113.0 19 8542.5 20 7972.0 21 7999.5 22 8027.0 23 8201.0 24 8375.0 25 9043.0 26 10988.5 27 12266.0 28 13948.0 29 15630.0 30 17132.0 31 18634.0 32 20852.0 33 23070.0 34 25337.5 35 27605.0 36 30140.5 37 32676.0 38 35532.5 39 38389.0 40 42934.5 41 47480.0 42 53175.0 43 58870.0 44 78892.5 45 98915.0 46 177111.5 47 255308.0 48 219976.0 49 184644.0 50 180510.5 51 176377.0 52 152047.5 53 127718.0 54 112638.0 55 97558.0 56 90902.0 57 84246.0 58 79296.0 59 74346.0 60 68959.0 61 63572.0 62 58270.5 63 52969.0 64 48072.5 65 43176.0 66 37022.5 67 30869.0 68 26747.0 69 22625.0 70 19548.0 71 16471.0 72 14354.5 73 12238.0 74 9982.5 75 6504.5 76 5282.0 77 4111.0 78 2940.0 79 2173.5 80 1407.0 81 1085.0 82 763.0 83 572.5 84 382.0 85 246.0 86 110.0 87 71.5 88 33.0 89 26.0 90 19.0 91 14.5 92 10.0 93 9.0 94 8.0 95 4.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1819686.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.538581869020426 #Duplication Level Percentage of deduplicated Percentage of total 1 74.2585739077214 25.647858343885392 2 9.03599886417761 6.2418117307754795 3 3.6801959592114533 3.8132624829378874 4 2.11923847138766 2.9278196577600157 5 1.518010342581467 2.6214962247634865 6 1.2000619725766601 2.4869063212642275 7 0.9788877814193624 2.3666577045395494 8 0.8740496235870026 2.4150747585476933 9 0.7268254677493788 2.2593168830115884 >10 5.464588034955534 30.970348408483993 >50 0.09032843457368947 2.098414702658197 >100 0.04511405651309373 2.9451112502721655 >500 0.003483035805301554 0.8050302360074143 >1k 0.002653741565944041 2.563287763494468 >5k 0.0011610119351005178 2.5644907546676095 >10k+ 8.292942393575127E-4 7.273112776930857 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36518 2.006829749748033 No Hit GAATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC 35862 1.9707795740583816 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC 22687 1.2467535607791675 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG 20814 1.1438237146408776 No Hit GAACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT 11082 0.609006169196224 No Hit GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 8407 0.4620027850958902 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTT 7973 0.43815251642316316 No Hit CGTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC 6242 0.3430262144128163 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCT 5986 0.3289578531680741 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTC 5767 0.316922809759486 No Hit CGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG 5322 0.2924680411895239 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTT 5070 0.2786194980892308 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCT 4829 0.2653754548861727 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGAACTAGT 4668 0.25652777457209647 No Hit CTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT 4129 0.22690727960758064 No Hit CGTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT 4067 0.22350009836861964 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTA 4043 0.22218118950192509 No Hit GAATATGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC 3888 0.21366323640452253 No Hit CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 3300 0.18134996917050525 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCC 3187 0.17514010658981824 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG 2403 0.13205575027779518 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTC 2349 0.12908820532773235 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.4954536112274314E-5 0.0 0.0 0.23927205023284237 0.0 2 5.4954536112274314E-5 0.0 0.0 1.013691373127012 0.0 3 5.4954536112274314E-5 0.0 0.0 1.628302905006688 0.0 4 5.4954536112274314E-5 0.0 0.0 2.899456279819705 0.0 5 5.4954536112274314E-5 0.0 0.0 6.367856872009786 0.0 6 5.4954536112274314E-5 0.0 0.0 8.7144155640039 0.0 7 5.4954536112274314E-5 0.0 0.0 10.610896605238485 0.0 8 5.4954536112274314E-5 0.0 0.0 13.025049376650697 0.0 9 5.4954536112274314E-5 0.0 0.0 14.272847073615997 0.0 10 5.4954536112274314E-5 0.0 0.0 17.244348750278895 0.0 11 5.4954536112274314E-5 0.0 0.0 18.929529600161786 0.0 12 5.4954536112274314E-5 0.0 0.0 21.599275919032184 0.0 13 5.4954536112274314E-5 0.0 0.0 22.34028288397009 0.0 14 5.4954536112274314E-5 0.0 0.0 22.75277163202882 0.0 15 5.4954536112274314E-5 0.0 0.0 23.374856980819768 0.0 16 5.4954536112274314E-5 0.0 0.0 24.012659326938824 0.0 17 5.4954536112274314E-5 0.0 0.0 24.65777062636081 0.0 18 5.4954536112274314E-5 0.0 0.0 25.365420187878566 0.0 19 5.4954536112274314E-5 0.0 0.0 26.14720341861178 0.0 20 5.4954536112274314E-5 0.0 0.0 26.697463188703985 0.0 21 5.4954536112274314E-5 0.0 0.0 27.2289834619819 0.0 22 1.0990907222454863E-4 0.0 0.0 27.8718965799594 0.0 23 1.0990907222454863E-4 0.0 0.0 28.39379980941767 0.0 24 1.0990907222454863E-4 0.0 0.0 28.85146118616069 0.0 25 1.6486360833682296E-4 0.0 0.0 29.246529346271828 0.0 26 1.6486360833682296E-4 0.0 0.0 29.630771462768852 0.0 27 1.6486360833682296E-4 0.0 0.0 30.073320342080997 0.0 28 1.6486360833682296E-4 0.0 0.0 30.476906455289537 0.0 29 2.1981814444909726E-4 0.0 0.0 30.904068064490247 0.0 30 2.1981814444909726E-4 0.0 0.0 31.411463296414876 0.0 31 2.1981814444909726E-4 0.0 0.0 31.812136819209467 0.0 32 2.1981814444909726E-4 0.0 0.0 32.23935338294629 0.0 33 2.1981814444909726E-4 0.0 0.0 32.64557731388822 0.0 34 2.747726805613716E-4 0.0 0.0 33.0488886544162 0.0 35 3.297272166736459E-4 0.0 0.0 33.468191764952856 0.0 36 4.396362888981945E-4 0.0 0.0 33.871942741769736 0.0 37 4.396362888981945E-4 0.0 0.0 34.31146912159571 0.0 38 4.945908250104688E-4 0.0 0.0 34.8044113105228 0.0 39 4.945908250104688E-4 0.0 0.0 35.4871664671817 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTACG 30 2.1662036E-6 45.000004 1 CCCCGTA 20 7.034372E-4 45.0 40 CTCGACG 20 7.034372E-4 45.0 1 CGTTATT 2105 0.0 44.35867 1 CGTTTTT 15360 0.0 43.54981 1 AGTACGG 230 0.0 43.043476 2 TAATACG 685 0.0 42.700733 4 CGCATCG 50 1.0822987E-9 40.5 21 CGATGAA 1580 0.0 40.44304 19 CCGATGA 1590 0.0 40.18868 18 CGTTCTG 840 0.0 40.17857 1 ACGATAG 45 1.929402E-8 40.000004 1 ATAATAC 1140 0.0 39.671055 3 TACGGCT 3115 0.0 39.510433 7 GATGAAT 1655 0.0 39.42598 20 GTTAACG 40 3.4596997E-7 39.375 1 ACAACGA 555 0.0 38.51351 13 GTTATTT 2505 0.0 38.353294 2 GTTTTTT 17850 0.0 37.90336 2 CGTTTCT 1085 0.0 37.741936 1 >>END_MODULE