SRR3550021_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550021_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	435801
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGCT	3634	0.8338668337153885	Illumina Single End Adapter 2 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	3424	0.7856797024329911	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	2946	0.6759966131330585	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	1039	0.23841156858290824	Illumina Single End Adapter 2 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	956	0.21936617859986554	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCC	846	0.19412530030908604	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	770	0.17668614803545657	No Hit
CGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTG	765	0.17553883538587567	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	676	0.1551166702233359	No Hit
GCCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTG	638	0.14639709408652116	No Hit
AGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTG	600	0.13767751794970642	No Hit
ACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTG	501	0.11496072748800484	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTC	486	0.1115187895392622	No Hit
GGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTG	477	0.1094536267700166	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGC	20	7.0284604E-4	45.000004	37
GTACAAG	40	6.7975634E-9	45.000004	1
TTTCGCG	20	7.0284604E-4	45.000004	1
GTTAACG	20	7.0284604E-4	45.000004	1
CCATACG	20	7.0284604E-4	45.000004	1
ACTACCG	20	7.0284604E-4	45.000004	1
ACTAATG	20	7.0284604E-4	45.000004	17
CATAACT	20	7.0284604E-4	45.000004	28
CGATGAC	20	7.0284604E-4	45.000004	10
GTTATCA	20	7.0284604E-4	45.000004	40
AAATGCG	20	7.0284604E-4	45.000004	1
CGGGTCA	25	3.886807E-5	45.0	6
CGGGTAC	25	3.886807E-5	45.0	6
GATCGAG	25	3.886807E-5	45.0	1
TACCAGG	35	1.2096098E-7	45.0	2
CGCATGG	45	3.8380676E-10	45.0	2
CCAGCGG	25	3.886807E-5	45.0	2
TATGCGG	25	3.886807E-5	45.0	2
GTAATCG	25	3.886807E-5	45.0	1
TCGTTTA	30	2.1623891E-6	44.999996	38