SRR3550019_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550019_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	735927
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGCT	4207	0.5716599608385071	No Hit
GCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	3894	0.5291285684585564	No Hit
CCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	3776	0.5130943694143577	No Hit
TCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	1691	0.2297782252859319	No Hit
ACTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	1443	0.1960792306845652	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCC	1400	0.19023625984642498	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1200	0.1630596512969357	No Hit
CGCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTG	985	0.13384479710623473	No Hit
GCCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTG	946	0.12854535843908432	No Hit
AGCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTG	866	0.1176747150192886	No Hit
GGCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTG	791	0.10748348681323011	No Hit
ACCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTG	747	0.10150463293234248	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGCGC	20	7.03163E-4	45.000004	27
CGTATAT	20	7.03163E-4	45.000004	30
TTGTGCG	20	7.03163E-4	45.000004	1
GTTAACG	20	7.03163E-4	45.000004	1
CATCGTT	20	7.03163E-4	45.000004	36
CATCGAT	20	7.03163E-4	45.000004	13
CGGCTAC	20	7.03163E-4	45.000004	25
TTACGCG	20	7.03163E-4	45.000004	1
CGGTCTA	40	6.8084773E-9	45.000004	31
AATAGGC	20	7.03163E-4	45.000004	18
TCGACTA	20	7.03163E-4	45.000004	28
TGCGTAG	40	6.8084773E-9	45.000004	1
CCCGAAC	20	7.03163E-4	45.000004	33
CTAACGG	25	3.889433E-5	45.0	2
TGATTCG	50	2.1827873E-11	45.0	15
ACGTCAT	25	3.889433E-5	45.0	35
TATCGAC	25	3.889433E-5	45.0	28
CAATAAG	25	3.889433E-5	45.0	38
TGGCACG	30	2.1644337E-6	44.999996	1
TACGCGC	30	2.1644337E-6	44.999996	34