SRR3550016_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550016_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1184244
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCT	5863	0.4950837834095001	No Hit
GCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	5401	0.4560715528218847	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4151	0.35051898088569583	No Hit
CCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	3729	0.3148844326000385	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCC	2843	0.24006876961166784	No Hit
TCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	2206	0.18627917895298604	No Hit
ACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	1708	0.14422703429360842	No Hit
CGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTG	1627	0.13738722763214337	No Hit
GCCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTG	1194	0.10082381671344756	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTAAT	20	7.0333725E-4	45.000004	2
TCGGTGC	20	7.0333725E-4	45.000004	45
TTTACGC	25	3.8908773E-5	45.0	38
CGAAACT	25	3.8908773E-5	45.0	11
TCGGTCG	25	3.8908773E-5	45.0	1
TAACGCC	75	0.0	42.0	12
CGTTTTT	2795	0.0	41.377464	1
CCAGTCG	90	0.0	40.000004	28
TCTAGCG	85	0.0	39.705883	1
TCGCAAT	35	6.2484505E-6	38.571426	16
TATACGG	90	0.0	37.500004	2
ATATGCG	30	1.13994305E-4	37.499996	1
CGTAATT	30	1.13994305E-4	37.499996	44
GTATACG	30	1.13994305E-4	37.499996	1
TGTAGCG	120	0.0	37.499996	1
CGACGGT	85	0.0	37.058823	28
CACGACG	85	0.0	37.058823	26
CGGTCTA	85	0.0	37.058823	31
AATACGG	85	0.0	37.058823	2
GCTACGA	135	0.0	36.666664	10