SRR3550015_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550015_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	640374
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGCT	3864	0.603397389650423	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	3496	0.545930971588478	No Hit
CCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	3450	0.5387476693307348	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCC	1371	0.21409363902969203	No Hit
TCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	1298	0.20269405066414314	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1212	0.18926439861705815	No Hit
ACTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	1130	0.17645938154890733	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTG	916	0.14304141017592845	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGC	818	0.1277378531920409	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCG	787	0.12289693210530096	No Hit
ACCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTG	745	0.11633826482649201	No Hit
AGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTG	721	0.11259045495288691	No Hit
GCCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTG	720	0.11243429620815336	No Hit
GAATCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTC	669	0.1044702002267425	No Hit
GGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTG	657	0.10259629528993994	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	655	0.10228397780047285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGCGAT	30	2.1639898E-6	45.000004	6
ACGCTAG	30	2.1639898E-6	45.000004	1
GGTAATC	25	3.8888636E-5	45.0	8
TCCGATC	20	7.0309435E-4	45.0	14
CAGTTGT	20	7.0309435E-4	45.0	10
TAGCGAA	20	7.0309435E-4	45.0	1
GCCGATT	20	7.0309435E-4	45.0	9
TTGACGT	20	7.0309435E-4	45.0	21
GCGATAC	20	7.0309435E-4	45.0	9
GCACTAT	20	7.0309435E-4	45.0	9
ATGCGAA	55	1.8189894E-12	44.999996	26
AATGCGA	60	3.6379788E-12	41.250004	25
CTCACGA	55	6.002665E-11	40.90909	24
CACGACG	55	6.002665E-11	40.90909	26
CTACGAA	55	6.002665E-11	40.90909	11
CGCATGG	45	1.925946E-8	39.999996	2
GTTAGCG	45	1.925946E-8	39.999996	1
TACGCGG	45	1.925946E-8	39.999996	2
CACAACG	45	1.925946E-8	39.999996	12
AGTCGAG	45	1.925946E-8	39.999996	1