SRR3550013_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550013_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	795049
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	4583	0.5764424582635788	No Hit
CTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGCT	4445	0.5590850375259889	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	4271	0.5371995939872888	No Hit
TCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	1829	0.2300487139786353	No Hit
ACTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	1520	0.19118318493577124	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1276	0.1604932526171343	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCC	1148	0.14439361599096406	No Hit
AGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	1022	0.12854553618707776	No Hit
CGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	980	0.12326284291911567	No Hit
GCCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	978	0.12301128609683176	No Hit
GGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	898	0.11294901320547537	No Hit
ACCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	889	0.1118170075051978	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	818	0.10288674031411901	No Hit

$Adapter graph$

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTACA	30	2.1646538E-6	45.000004	34
TCGACAT	35	1.2113014E-7	45.000004	1
TGATCGG	25	3.8897168E-5	45.0	2
CTTGTCA	40	6.8102963E-9	45.0	11
AATCCGG	20	7.0319726E-4	45.0	2
ATTAGCG	40	6.8102963E-9	45.0	1
ACGTTGC	20	7.0319726E-4	45.0	27
GTTTACG	20	7.0319726E-4	45.0	1
CGGTTAT	20	7.0319726E-4	45.0	6
GACCGCA	25	3.8897168E-5	45.0	28
ACGATTG	20	7.0319726E-4	45.0	1
AATGCGA	75	0.0	45.0	25
TACGCGC	25	3.8897168E-5	45.0	34
CGAATAT	155	0.0	45.0	14
GATGCGA	20	7.0319726E-4	45.0	11
ATAACGG	25	3.8897168E-5	45.0	2
ACGTAAG	45	3.8380676E-10	45.0	1
AATAGTG	20	7.0319726E-4	45.0	19
CGCGTAA	25	3.8897168E-5	45.0	31
TCGACTC	20	7.0319726E-4	45.0	25