SRR3550006_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550006_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	853816
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	3622	0.4242131794203904	No Hit
CTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGCT	3243	0.3798242244230607	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	2681	0.3140020800734584	No Hit
TCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	1364	0.15975338948907025	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1160	0.13586065381768436	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1060	0.12414852848857366	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCC	1034	0.12110337590300486	No Hit
ACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	978	0.11454458571870285	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	860	0.1007242778303522	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATAGCG	45	3.8380676E-10	45.000004	1
AACGTGT	25	3.8899605E-5	45.0	27
CTCGTAG	20	7.032266E-4	45.0	1
TCGATAG	20	7.032266E-4	45.0	1
GCCGATT	40	6.8121153E-9	45.0	9
TACGCGG	40	6.8121153E-9	45.0	2
CGAATAT	70	0.0	45.0	14
ATGCGAA	25	3.8899605E-5	45.0	26
CCGGTTA	20	7.032266E-4	45.0	20
CGGTCTA	80	0.0	45.0	31
ACGTAAG	25	3.8899605E-5	45.0	1
ATACGCC	20	7.032266E-4	45.0	12
CGAAGTT	20	7.032266E-4	45.0	15
CTACGAA	75	0.0	42.000004	11
TGATTCG	70	0.0	41.785713	15
ACGTAGG	55	6.002665E-11	40.909092	2
CACAACG	110	0.0	40.909092	12
GCATATC	50	1.0804797E-9	40.5	28
ACGGGAC	235	0.0	40.212765	5
ATAACGC	85	0.0	39.705883	11