SRR3550001_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550001_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	651596
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGCT	3731	0.5725940613508984	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	3432	0.526706732392464	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	3012	0.46224961479198773	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCC	1396	0.21424318135777384	No Hit
TCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	1348	0.2068766536320051	No Hit
ACTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	1082	0.16605381248503676	No Hit
CGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTG	968	0.14855830913633603	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	925	0.14195912804866817	No Hit
AGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTG	804	0.12338933940662618	No Hit
GGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTG	735	0.11279995580083366	No Hit
GCCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTG	681	0.10451261210934382	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	25	3.888939E-5	45.0	1
CCGATAT	20	7.0310355E-4	45.0	12
GCTCTAG	20	7.0310355E-4	45.0	1
TCGTGTT	20	7.0310355E-4	45.0	23
ATATACG	25	3.888939E-5	45.0	1
CTCGACA	20	7.0310355E-4	45.0	38
CGGTCTA	40	6.8066583E-9	45.0	31
ATGCACG	25	3.888939E-5	45.0	1
TGAGACG	20	7.0310355E-4	45.0	10
CGCACGG	30	2.164048E-6	44.999996	2
GCATCGC	60	3.6379788E-12	41.249996	22
CGAATAT	115	0.0	41.086956	14
GCTACGA	115	0.0	41.086956	10
CGTGCGG	55	6.002665E-11	40.909092	2
TCGTTTA	45	1.9261279E-8	40.0	38
CCGGGAC	45	1.9261279E-8	40.0	5
CCTATGC	90	0.0	40.0	35
TATACGG	45	1.9261279E-8	40.0	2
TGTTGCG	40	3.4551522E-7	39.375	1
TGATTCG	40	3.4551522E-7	39.375	15