SRR3549998_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549998_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1136476
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGCT	5290	0.4654739739334574	No Hit
GCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	4616	0.40616783812416635	No Hit
CCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	4017	0.3534610497713986	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCC	2116	0.186189589573383	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1878	0.1652476603113484	No Hit
TCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	1745	0.15354481748844673	No Hit
ACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	1392	0.12248388879307615	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAG	20	7.0332544E-4	45.0	6
TACGTAG	35	1.2119199E-7	45.0	1
CGCATCG	45	1.9283107E-8	40.0	21
CGTAAGG	130	0.0	39.807693	2
TCGTTAG	40	3.4581717E-7	39.375	1
TTTAGCG	35	6.2482286E-6	38.571426	1
CGGTTGA	35	6.2482286E-6	38.571426	30
TGCGTAG	70	0.0	38.571426	1
CGAGGGT	235	0.0	38.29787	4
TATGGGA	565	0.0	38.23009	4
TTACGAG	65	9.094947E-12	38.076927	1
AACGTTG	30	1.1399138E-4	37.499996	2
TGTTACG	30	1.1399138E-4	37.499996	1
ATAACGC	60	1.5643309E-10	37.499996	11
TCGTTCA	85	0.0	37.058823	16
TCGTTTA	55	2.748493E-9	36.81818	38
CGTTTTT	1495	0.0	36.571907	1
TATGGGT	235	0.0	36.38298	4
CGTTAGG	155	0.0	36.29032	2
TCACCGA	25	0.0021070982	36.000004	22