SRR3549993_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549993_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	644305
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	3132	0.4861051831042752	No Hit
CTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGCT	2824	0.43830173597907823	No Hit
CCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	2296	0.3563529694787407	No Hit
TCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	1147	0.1780212787422106	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1011	0.1569132631284873	No Hit
ACTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	922	0.1430999293812713	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCC	779	0.12090547178742986	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTAGCG	25	3.8888895E-5	45.000004	1
AACGAAC	25	3.8888895E-5	45.000004	20
GATTCGC	30	2.1640099E-6	45.000004	11
TCTTCGA	20	7.030977E-4	45.0	19
CGATTCG	20	7.030977E-4	45.0	10
CCCAATC	20	7.030977E-4	45.0	19
CGGTATG	20	7.030977E-4	45.0	32
TTCGATC	20	7.030977E-4	45.0	21
CGTTTAC	35	1.2108103E-7	45.0	33
TAGTACG	20	7.030977E-4	45.0	1
TCACGTT	20	7.030977E-4	45.0	45
CGTCATA	95	0.0	42.63158	38
CCTCGTG	75	0.0	42.000004	15
CGACGGT	70	0.0	41.785713	28
CGGTCTA	70	0.0	41.785713	31
CCCGATC	70	0.0	41.785713	41
TTACGGG	135	0.0	41.666668	3
TATGGGT	60	3.6379788E-12	41.250004	4
TGGCTAG	60	3.6379788E-12	41.250004	1
GTACTAG	50	1.0804797E-9	40.500004	1