SRR3549992_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549992_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	636330
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	3860	0.6066034918988575	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT	3609	0.5671585498090613	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	3376	0.5305423286659438	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCC	1121	0.17616645451259566	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1092	0.17160907076516901	No Hit
ACTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1070	0.16815174516367293	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	947	0.14882215202803578	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	902	0.14175034966133923	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTAACG	30	2.163968E-6	45.000004	1
CGACGGT	40	6.8066583E-9	45.0	28
TAGGTTG	20	7.030911E-4	45.0	1
TAGCGAA	25	3.8888356E-5	45.0	18
TTGAGCG	20	7.030911E-4	45.0	1
TATTACG	20	7.030911E-4	45.0	1
GGACGAT	25	3.8888356E-5	45.0	8
TCGTAAG	20	7.030911E-4	45.0	1
CGGCTAC	25	3.8888356E-5	45.0	25
GATCTCG	20	7.030911E-4	45.0	11
CACAACG	20	7.030911E-4	45.0	12
TTACACG	55	1.8189894E-12	45.0	34
CGATACG	20	7.030911E-4	45.0	10
ATCGACG	20	7.030911E-4	45.0	1
GGGCCTA	155	0.0	43.548386	7
TAGTAAG	100	0.0	42.75	1
TTAATCG	130	0.0	41.538464	20
ACACGCG	55	6.002665E-11	40.909092	36
CGTATGG	50	1.0804797E-9	40.5	2
ATCGTTG	135	0.0	40.0	23