SRR3549985_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549985_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	565811
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGCT	3396	0.6002004202816842	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	3048	0.5386957835743738	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	2361	0.41727714731597654	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCC	1244	0.21986140248245437	No Hit
TCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	999	0.17656072434081346	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	959	0.1694912258687088	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTG	881	0.15570570384810475	No Hit
ACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	848	0.14987336760861844	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	675	0.11929778671676584	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	622	0.10993070124122718	No Hit
AGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTG	613	0.10834006408500364	No Hit
ACCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTG	576	0.10180077799830686	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	50	2.1827873E-11	45.000004	25
GCGATAA	35	1.2104647E-7	45.000004	9
TACGTAG	25	3.8882856E-5	45.000004	1
GTCGATG	20	7.0302474E-4	45.0	1
GGATATC	40	6.8048394E-9	45.0	8
ACGGGTA	40	6.8048394E-9	45.0	5
ATACCGG	20	7.0302474E-4	45.0	2
CGACCGT	30	2.1635406E-6	44.999996	23
ACTACGG	30	2.1635406E-6	44.999996	2
AAATGCG	30	2.1635406E-6	44.999996	1
TGGGTAC	85	0.0	42.35294	6
ATAGCGG	65	0.0	41.53846	2
AATACGG	60	3.6379788E-12	41.249996	2
CGACGGT	50	1.0786607E-9	40.500004	28
GCGATCA	50	1.0786607E-9	40.500004	9
ACCGTGT	50	1.0786607E-9	40.500004	25
CGGTCTA	50	1.0786607E-9	40.500004	31
TACGGGA	135	0.0	40.000004	4
CGGGATA	45	1.9254003E-8	40.0	6
AAGGGAT	300	0.0	39.75	5