SRR3549984_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549984_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	992883
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	7056	0.7106577512154	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	6375	0.6420696094101722	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	5869	0.5911069078632629	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	2905	0.2925823082880863	No Hit
ACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	2040	0.20546227501125508	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCC	1849	0.18622536592931896	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1692	0.1704128280975704	No Hit
GCCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1458	0.14684509655216174	No Hit
AGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1437	0.14473004372116352	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1390	0.13999635405178656	No Hit
ACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1262	0.12710460346284508	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1214	0.12227019699199201	No Hit
GGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1191	0.11995371055804158	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCC	25	3.8904203E-5	45.0	16
ATTAGCG	20	7.032822E-4	45.0	1
GGTCGAC	20	7.032822E-4	45.0	9
AGATACG	25	3.8904203E-5	45.0	1
GTCCTCG	25	3.8904203E-5	45.0	22
CGTGAGA	20	7.032822E-4	45.0	18
TTCGTTC	20	7.032822E-4	45.0	28
ATTCGGC	25	3.8904203E-5	45.0	17
TAACGCA	25	3.8904203E-5	45.0	1
CGTTAGG	145	0.0	45.0	2
CACTACG	25	3.8904203E-5	45.0	1
CTATTCG	20	7.032822E-4	45.0	38
CGGTCTA	70	0.0	45.0	31
ACACTCG	20	7.032822E-4	45.0	23
TTCGATA	20	7.032822E-4	45.0	32
CGTTTAG	25	3.8904203E-5	45.0	30
ATGCACG	20	7.032822E-4	45.0	1
CCGTTTA	20	7.032822E-4	45.0	24
AAGTCGC	20	7.032822E-4	45.0	15
CGCATCG	30	2.1652013E-6	44.999996	21