SRR3549982_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549982_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	893562
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	6488	0.7260828011934258	No Hit
CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT	5957	0.6666577137344695	No Hit
CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	5259	0.588543380313845	No Hit
TCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	2292	0.2565015074499587	No Hit
ACTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	1862	0.20837949688997515	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1451	0.16238380772682812	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCC	1394	0.1560048435363187	No Hit
GCCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	1348	0.1508569075229251	No Hit
CGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	1198	0.1340701596531634	No Hit
AGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	1181	0.1321676615612571	No Hit
GGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	1137	0.12724354885279365	No Hit
ACCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	1109	0.12411002258377146	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	20	7.032442E-4	45.000004	1
GTCGACT	20	7.032442E-4	45.000004	33
CCCTATA	20	7.032442E-4	45.000004	4
CACGACA	20	7.032442E-4	45.000004	14
TAACGCG	35	1.2115197E-7	45.000004	1
ATCGTTC	20	7.032442E-4	45.000004	22
TAGTTCG	20	7.032442E-4	45.000004	1
TCTCGAT	20	7.032442E-4	45.000004	44
TCGTAGT	20	7.032442E-4	45.000004	41
TTACGAG	30	2.1649576E-6	45.000004	1
ACCCGTC	20	7.032442E-4	45.000004	17
AACTCGC	20	7.032442E-4	45.000004	39
CGCACGA	20	7.032442E-4	45.000004	39
ATACGAC	20	7.032442E-4	45.000004	2
CCGCACG	20	7.032442E-4	45.000004	38
GTACGAG	35	1.2115197E-7	45.000004	1
TGGTACG	20	7.032442E-4	45.000004	1
TAATCGA	20	7.032442E-4	45.000004	33
ACGATAT	25	3.8901067E-5	45.0	15
GTATGCG	50	2.1827873E-11	45.0	1