##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549982_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 893562 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.257255791987575 33.0 31.0 34.0 30.0 34.0 2 32.41719433010804 34.0 31.0 34.0 30.0 34.0 3 32.42047446064179 34.0 31.0 34.0 30.0 34.0 4 35.97302369617329 37.0 35.0 37.0 35.0 37.0 5 35.86013953144829 37.0 35.0 37.0 35.0 37.0 6 35.81207459583107 37.0 35.0 37.0 35.0 37.0 7 36.032678202519804 37.0 35.0 37.0 35.0 37.0 8 35.9983067766982 37.0 35.0 37.0 35.0 37.0 9 37.52707926254698 39.0 38.0 39.0 35.0 39.0 10 37.369966493651255 39.0 37.0 39.0 34.0 39.0 11 37.282623925368355 39.0 37.0 39.0 34.0 39.0 12 37.157048979253815 39.0 37.0 39.0 34.0 39.0 13 37.05967800779353 39.0 37.0 39.0 33.0 39.0 14 38.161135992801846 40.0 37.0 41.0 33.0 41.0 15 38.26813136637413 40.0 37.0 41.0 34.0 41.0 16 38.30237185556234 40.0 37.0 41.0 34.0 41.0 17 38.34879952370401 40.0 37.0 41.0 34.0 41.0 18 38.303826707044394 40.0 37.0 41.0 34.0 41.0 19 38.27067847558423 40.0 37.0 41.0 34.0 41.0 20 38.21145370998319 40.0 37.0 41.0 34.0 41.0 21 38.18780118223469 40.0 37.0 41.0 34.0 41.0 22 38.07301116206822 40.0 37.0 41.0 34.0 41.0 23 37.83074369769529 40.0 36.0 41.0 33.0 41.0 24 37.63083815112997 39.0 36.0 41.0 33.0 41.0 25 37.635030361631316 39.0 36.0 41.0 33.0 41.0 26 37.724618996779185 39.0 36.0 41.0 33.0 41.0 27 37.7750217668164 40.0 36.0 41.0 33.0 41.0 28 37.74533160541742 40.0 36.0 41.0 33.0 41.0 29 37.75288340372576 40.0 36.0 41.0 33.0 41.0 30 37.6758568515671 40.0 36.0 41.0 33.0 41.0 31 37.50965685649121 40.0 36.0 41.0 33.0 41.0 32 37.4391111081268 39.0 36.0 41.0 33.0 41.0 33 37.359118897177815 39.0 35.0 41.0 33.0 41.0 34 37.326222466935704 39.0 35.0 41.0 33.0 41.0 35 37.27684033116896 39.0 35.0 41.0 33.0 41.0 36 37.17178550565042 39.0 35.0 41.0 32.0 41.0 37 37.096955779229646 39.0 35.0 41.0 32.0 41.0 38 37.00564930021644 39.0 35.0 41.0 32.0 41.0 39 36.97757626219557 39.0 35.0 41.0 32.0 41.0 40 36.945835879323425 39.0 35.0 41.0 32.0 41.0 41 36.88296727031812 39.0 35.0 41.0 32.0 41.0 42 36.851559265053794 39.0 35.0 41.0 32.0 41.0 43 36.75428453761462 39.0 35.0 41.0 31.0 41.0 44 36.66669128723021 39.0 35.0 41.0 31.0 41.0 45 36.62592411047023 39.0 35.0 41.0 31.0 41.0 46 36.520955456924085 39.0 35.0 40.0 31.0 41.0 47 36.42250901448361 39.0 35.0 40.0 31.0 41.0 48 36.374998041546085 38.0 35.0 40.0 31.0 41.0 49 36.36943938976814 39.0 35.0 40.0 31.0 41.0 50 36.28974486381471 38.0 35.0 40.0 31.0 41.0 51 35.31871655240487 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 0.0 10 7.0 11 9.0 12 11.0 13 19.0 14 18.0 15 33.0 16 77.0 17 120.0 18 201.0 19 370.0 20 698.0 21 1042.0 22 1526.0 23 2278.0 24 3248.0 25 4138.0 26 5387.0 27 6473.0 28 7612.0 29 9420.0 30 12024.0 31 15526.0 32 20964.0 33 30014.0 34 55796.0 35 74157.0 36 71694.0 37 110746.0 38 195235.0 39 264575.0 40 141.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.805423686325064 21.63867756238515 23.962411114170028 11.593487637119752 2 31.82957645916008 24.512121151078492 24.99781772277693 18.660484666984495 3 31.527526909156833 24.04947837978786 26.917326385857947 17.50566832519736 4 29.63207925135581 25.680702626118833 25.700063341995293 18.98715478053006 5 25.02557181258827 29.400086395795704 24.756760023367153 20.817581768248875 6 26.358327681794886 33.397682533500756 24.853115956139586 15.390873828564777 7 76.57487672931481 6.777145849980191 10.224696215819383 6.423281204885615 8 74.75776722823933 5.967017397785492 11.112155619867451 8.163059754107717 9 68.31993750853327 7.973257591526944 14.286305818734457 9.420499081205334 10 38.66200666545802 24.119311250926067 20.912370937886795 16.306311145729115 11 28.598575140840815 24.698789787390243 25.5446180567213 21.15801701504764 12 25.93048943442089 21.70918190343815 32.08999487444631 20.270333787694643 13 22.950505952580794 24.585535195095584 32.85077028790392 19.613188564419705 14 18.621427500274184 28.989818277858724 30.160302250990977 22.22845197087611 15 17.386146680364654 25.250290410738145 35.96392863617746 21.399634272719744 16 18.75202839870093 25.409764515500882 32.24107560527417 23.597131480524013 17 18.999688885606147 25.13065685425298 28.192112019087652 27.67754224105322 18 19.9820493709446 25.724795817190078 30.842403772765625 23.450751039099693 19 21.783155505717566 26.2445135312379 28.18539731993975 23.78693364310479 20 23.391102128335806 27.08866312578198 28.623755262645457 20.896479483236753 21 22.154030721986835 27.113731335934162 29.217558490625162 21.514679451453844 22 19.226198070195466 26.27114850452459 26.832049706679562 27.67060371860039 23 20.170172858738397 26.557194688225326 27.878871303837897 25.39376114919838 24 22.136012945939957 24.401216703485602 28.581340746361196 24.881429604213253 25 20.347105181285684 26.90009199137833 26.927622257884735 25.825180569451252 26 19.420140963917447 27.779605668101375 29.10788507120938 23.692368296771797 27 21.701795734375455 28.166372339020683 27.784529780809837 22.347302145794025 28 18.58897312105931 27.956537990648663 29.208157911818095 24.24633097647393 29 21.069271074642835 25.469077691307373 29.450334727752526 24.01131650629727 30 21.629724630187944 27.030692889805074 27.786544190554206 23.553038289452775 31 21.360017547747105 29.51613877940199 24.296243573473358 24.82760009937755 32 22.963487704266743 26.973506035395417 25.305798590360823 24.757207669977014 33 21.11828837842254 27.142828365575077 27.52993077145178 24.208952484550597 34 19.563835525682606 25.02199063970939 28.742381614258438 26.671792220349566 35 20.856862758264118 24.051380877879765 28.20016965806514 26.89158670579098 36 20.830563519934824 26.656012677351992 29.622454849243812 22.890968953469372 37 21.259520883833467 27.903715690685143 28.265190328147348 22.571573097334042 38 21.112468972494355 26.59121583057471 27.170582455386423 25.125732741544514 39 22.719744125197806 22.182456281712966 31.082790002260612 24.01500959082862 40 21.35442196512385 21.58708629059875 31.89504477585215 25.163446968425244 41 18.132037844044397 24.283037998482477 27.951278142982805 29.633646014490324 42 20.307488456313045 24.081485112392873 30.221294101584444 25.389732329709634 43 22.36218639557188 23.84434432081937 30.189511192284364 23.603958091324383 44 21.460402300008283 23.626228510164935 28.75446807272467 26.15890111710211 45 21.73257143880335 22.353904933289463 27.779493756448908 28.134029871458278 46 22.15738807156079 23.100691390188928 29.696092716565836 25.04582782168445 47 18.783699396348545 22.77279024846625 32.302850837434896 26.140659517750308 48 18.764114857167158 22.25307253441843 31.27975451059915 27.70305809781526 49 21.394262513401422 21.159248043224757 32.903592587867436 24.542896855506388 50 20.255897184526646 20.377768974061116 31.590756992799605 27.775576848612634 51 19.09100879401765 20.95847853870241 28.135932369550183 31.814580297729762 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 771.0 1 1219.5 2 1668.0 3 2286.0 4 2904.0 5 2154.0 6 1404.0 7 1461.5 8 1519.0 9 1653.5 10 1788.0 11 1884.0 12 1980.0 13 2076.0 14 2172.0 15 2264.0 16 2356.0 17 2229.0 18 2102.0 19 2216.0 20 2330.0 21 2337.5 22 2345.0 23 2732.5 24 3120.0 25 3956.5 26 5426.5 27 6060.0 28 7550.0 29 9040.0 30 10276.0 31 11512.0 32 12757.5 33 14003.0 34 15830.5 35 17658.0 36 19382.0 37 21106.0 38 24195.0 39 27284.0 40 33545.0 41 39806.0 42 48401.5 43 56997.0 44 70959.0 45 84921.0 46 100907.5 47 116894.0 48 113833.0 49 110772.0 50 91735.5 51 72699.0 52 62630.5 53 52562.0 54 44856.5 55 37151.0 56 35943.5 57 34736.0 58 34077.5 59 33419.0 60 31205.0 61 28991.0 62 27371.5 63 25752.0 64 22172.5 65 18593.0 66 16178.5 67 13764.0 68 11844.5 69 9925.0 70 8197.0 71 6469.0 72 5465.0 73 4461.0 74 3999.0 75 2831.0 76 2125.0 77 1547.5 78 970.0 79 785.0 80 600.0 81 447.5 82 295.0 83 178.0 84 61.0 85 73.5 86 86.0 87 59.0 88 32.0 89 27.5 90 23.0 91 14.0 92 5.0 93 2.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 893562.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.59918381597428 #Duplication Level Percentage of deduplicated Percentage of total 1 68.54604735426435 19.60361008143083 2 12.919041310788629 7.3894807434681855 3 5.16568130545672 4.43202807568496 4 2.6370094098947425 3.0166526735213437 5 1.579853931045324 2.2591266488177384 6 1.0179060413016394 1.7466769189545772 7 0.7131174676010611 1.4276204276813378 8 0.5584667114123242 1.2777353707826975 9 0.4663562132178869 1.2003666358986036 >10 5.862024022674882 40.90291866788441 >50 0.4484534432515893 7.883823620792139 >100 0.07454398317549515 4.208909144561649 >500 0.006740679329699027 1.1724299936852807 >1k 0.003568594939252426 1.4710089832755064 >5k 0.0011895316464174753 2.0076120135607125 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC 6488 0.7260828011934258 No Hit CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT 5957 0.6666577137344695 No Hit CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC 5259 0.588543380313845 No Hit TCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC 2292 0.2565015074499587 No Hit ACTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC 1862 0.20837949688997515 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1451 0.16238380772682812 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCC 1394 0.1560048435363187 No Hit GCCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG 1348 0.1508569075229251 No Hit CGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG 1198 0.1340701596531634 No Hit AGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG 1181 0.1321676615612571 No Hit GGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG 1137 0.12724354885279365 No Hit ACCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG 1109 0.12411002258377146 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1191165246507797E-4 0.0 0.0 0.7006788560838532 0.0 2 1.1191165246507797E-4 0.0 0.0 2.586166376815487 0.0 3 1.1191165246507797E-4 0.0 0.0 3.653020159765075 0.0 4 1.1191165246507797E-4 0.0 0.0 4.798771657702543 0.0 5 1.1191165246507797E-4 0.0 0.0 7.4382079810914075 0.0 6 1.1191165246507797E-4 0.0 0.0 8.878622859969425 0.0 7 1.1191165246507797E-4 0.0 0.0 10.368614600889474 0.0 8 1.1191165246507797E-4 0.0 0.0 12.736105608788199 0.0 9 1.1191165246507797E-4 0.0 0.0 13.622222073006686 0.0 10 1.1191165246507797E-4 0.0 0.0 15.3587551843073 0.0 11 1.1191165246507797E-4 0.0 0.0 17.94212376981116 0.0 12 1.1191165246507797E-4 0.0 0.0 19.87271168648622 0.0 13 1.1191165246507797E-4 0.0 0.0 20.66124118975516 0.0 14 1.1191165246507797E-4 0.0 0.0 20.989142331477836 0.0 15 1.1191165246507797E-4 0.0 0.0 21.566718369850104 0.0 16 1.1191165246507797E-4 0.0 0.0 22.743581307172864 0.0 17 1.1191165246507797E-4 0.0 0.0 24.128040359818346 0.0 18 3.357349573952339E-4 0.0 0.0 25.70565892461855 0.0 19 3.357349573952339E-4 0.0 0.0 26.579129372108483 0.0 20 3.357349573952339E-4 0.0 0.0 27.43547733677126 0.0 21 3.357349573952339E-4 0.0 0.0 28.408437243302647 0.0 22 3.357349573952339E-4 0.0 0.0 29.4238116661183 0.0 23 3.357349573952339E-4 0.0 0.0 30.39598819108243 0.0 24 3.357349573952339E-4 0.0 0.0 31.18451769435137 0.0 25 3.357349573952339E-4 0.0 0.0 31.86370951316193 0.0 26 4.476466098603119E-4 0.0 0.0 32.4762019871033 0.0 27 4.476466098603119E-4 0.0 0.0 33.070229038387936 0.0 28 4.476466098603119E-4 0.0 0.0 33.70767781082902 0.0 29 4.476466098603119E-4 0.0 0.0 34.374223612911024 0.0 30 4.476466098603119E-4 0.0 0.0 35.060465865826885 0.0 31 4.476466098603119E-4 0.0 0.0 35.71246315308843 0.0 32 4.476466098603119E-4 0.0 0.0 36.33558723401398 0.0 33 4.476466098603119E-4 0.0 0.0 36.907120043153135 0.0 34 4.476466098603119E-4 0.0 0.0 37.47182624149192 0.0 35 4.476466098603119E-4 0.0 0.0 38.0673081442586 0.0 36 4.476466098603119E-4 0.0 0.0 38.63268581251217 0.0 37 4.476466098603119E-4 0.0 0.0 39.18407452420761 0.0 38 4.476466098603119E-4 0.0 0.0 39.71565487341673 0.0 39 4.476466098603119E-4 0.0 0.0 40.292559441874204 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATACG 20 7.032442E-4 45.000004 1 GTCGACT 20 7.032442E-4 45.000004 33 CCCTATA 20 7.032442E-4 45.000004 4 CACGACA 20 7.032442E-4 45.000004 14 TAACGCG 35 1.2115197E-7 45.000004 1 ATCGTTC 20 7.032442E-4 45.000004 22 TAGTTCG 20 7.032442E-4 45.000004 1 TCTCGAT 20 7.032442E-4 45.000004 44 TCGTAGT 20 7.032442E-4 45.000004 41 TTACGAG 30 2.1649576E-6 45.000004 1 ACCCGTC 20 7.032442E-4 45.000004 17 AACTCGC 20 7.032442E-4 45.000004 39 CGCACGA 20 7.032442E-4 45.000004 39 ATACGAC 20 7.032442E-4 45.000004 2 CCGCACG 20 7.032442E-4 45.000004 38 GTACGAG 35 1.2115197E-7 45.000004 1 TGGTACG 20 7.032442E-4 45.000004 1 TAATCGA 20 7.032442E-4 45.000004 33 ACGATAT 25 3.8901067E-5 45.0 15 GTATGCG 50 2.1827873E-11 45.0 1 >>END_MODULE