SRR3549981_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549981_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1470021
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT	6561	0.4463201546100362	No Hit
GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	6524	0.4438031837640415	No Hit
CCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	5163	0.35121947237488443	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2929	0.19924885426806827	No Hit
TCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	2600	0.17686822161043958	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCC	2442	0.16612007583565133	No Hit
ACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	1832	0.12462406999627895	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1769	0.12033841693417985	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	90	0.0	42.5	28
CGGTCTA	90	0.0	42.5	31
TCTAGCG	50	1.0822987E-9	40.5	1
TCGACAC	50	1.0822987E-9	40.5	34
TATACGG	95	0.0	40.26316	2
TCGATTG	45	1.9288564E-8	40.0	1
TACTCGT	40	3.4590994E-7	39.375	11
CGAATAT	400	0.0	38.25	14
CGTAAGG	195	0.0	38.076923	2
CGTTTTT	1945	0.0	38.059124	1
AGGGCGT	215	0.0	37.67442	6
TATAGCG	90	0.0	37.5	1
GCAACCG	30	1.14007715E-4	37.499996	1
GTATACG	55	2.750312E-9	36.81818	1
TAAGGGT	325	0.0	36.692307	4
AATAGCG	80	0.0	36.5625	1
GCGTAAG	80	0.0	36.5625	1
GCTACGA	450	0.0	36.5	10
CTACGAA	440	0.0	36.30682	11
GGCGATA	440	0.0	36.30682	8