SRR3549973_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549973_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1558494
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	4492	0.2882269678291992	No Hit
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	4488	0.2879703097990753	No Hit
CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT	4231	0.2714800313636113	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4180	0.26820764147953086	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCC	2332	0.1496316315622646	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1626	0.10433148924538689	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAG	40	6.8175723E-9	45.0	1
GTATACG	40	6.8175723E-9	45.0	1
TATAGCG	40	6.8175723E-9	45.0	1
CGGTCTA	55	1.8189894E-12	45.0	31
TGCGACG	55	6.184564E-11	40.909092	1
TACGAAT	255	0.0	40.588234	12
AATTGCG	50	1.0822987E-9	40.500004	1
GTACGAG	195	0.0	39.23077	1
TAACGCC	35	6.249724E-6	38.571426	12
GCTACGA	275	0.0	37.636364	10
TCGAATA	30	1.1401085E-4	37.499996	22
CGACAGG	170	0.0	37.058823	2
CGAATAT	280	0.0	36.964283	14
TAGCACG	55	2.750312E-9	36.81818	1
CTACGAA	295	0.0	36.61017	11
CGTTCGG	285	0.0	36.31579	45
TACGAGG	355	0.0	36.126762	2
TAGGGTC	405	0.0	36.11111	5
GATCGAG	50	4.8808943E-8	36.000004	1
ACGTTAC	25	0.002107338	36.000004	28