SRR3549971_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549971_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1090040
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	5681	0.5211735349161498	No Hit
CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT	5606	0.5142930534659278	No Hit
CCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	4664	0.4278742064511394	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCC	2038	0.18696561594069944	No Hit
TCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	2010	0.18439690286594987	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1699	0.15586583978569593	No Hit
ACTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	1679	0.15403104473230342	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTG	1538	0.141095739605886	No Hit
GCCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTG	1266	0.11614252687974753	No Hit
AGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTG	1098	0.10073024843125022	No Hit
GGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTG	1091	0.10008807016256285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	35	1.2118471E-7	45.000004	34
CTTACGA	35	1.2118471E-7	45.000004	29
CTAGACG	25	3.8906735E-5	45.0	1
TAATACG	20	7.0331275E-4	45.0	1
CGTTAGG	95	0.0	45.0	2
ACGATAG	20	7.0331275E-4	45.0	1
TCGACCT	25	3.8906735E-5	45.0	23
TCGAACA	20	7.0331275E-4	45.0	32
TACCGGT	30	2.1653996E-6	44.999996	40
CGTAAGG	85	0.0	39.705883	2
TACGGGA	250	0.0	39.6	4
TCACGAC	80	0.0	39.375	25
GTTCACG	40	3.458008E-7	39.375	1
TATACGG	80	0.0	39.375	2
GTAGGGT	315	0.0	39.285713	4
CTAGTCG	35	6.2479903E-6	38.57143	1
TTAACGG	70	0.0	38.57143	2
CCGGTAT	35	6.2479903E-6	38.57143	42
TATGCGG	95	0.0	37.894737	2
ACGGGTA	125	0.0	37.8	5