SRR3549967_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549967_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	880387
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	5044	0.5729298592550776	No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	4481	0.5089807096197467	No Hit
CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	3832	0.4352631286013991	No Hit
TCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	1977	0.22456033539795567	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCC	1419	0.16117911781977698	No Hit
ACTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	1416	0.1608383585854857	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1298	0.14743516203669524	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1121	0.12733036721350952	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1033	0.11733476300763188	No Hit
CGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	955	0.1084750229160585	No Hit
GCCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	950	0.10790709085890637	No Hit
AGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTG	948	0.10767991803604551	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	897	0.1018870110530937	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATATGG	70	0.0	45.000004	2
GTTAGCG	65	0.0	45.000004	1
CGAACTC	25	3.8900587E-5	45.0	26
GTCGAAA	25	3.8900587E-5	45.0	15
ACCGAAT	20	7.032387E-4	45.0	25
CACGAAC	40	6.8121153E-9	45.0	24
CGTAGAC	20	7.032387E-4	45.0	16
GCGATAC	40	6.8121153E-9	45.0	9
ACCACGG	50	2.1827873E-11	45.0	2
GTATACG	20	7.032387E-4	45.0	1
TATAGCG	50	2.1827873E-11	45.0	1
ATGCGAA	45	3.8380676E-10	45.0	26
TTACGCA	20	7.032387E-4	45.0	41
CGATACA	20	7.032387E-4	45.0	10
TTAGCCG	30	2.1649212E-6	44.999996	1
CGTAAGG	180	0.0	42.5	2
CGTATGG	75	0.0	42.000004	2
TCGATAG	55	6.002665E-11	40.909092	1
GCGTAAG	135	0.0	40.000004	1
CGGGTAT	80	0.0	39.375	6